FC875483

Overview
NameFC875483
Unique NameFC875483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24
Identity = 69/185 (37.30%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  106 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPCRGK--YYGRGPIQLSWKLHY 642
            SA NCG    C  G CCS++G+CG   DYC  GCQ    Q  C    P      +      I++      +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC     Y+GRGPIQLSW  +Y
Sbjct:   22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY 180          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 68/188 (36.17%), Postives = 92/188 (48.94%), Query Frame = 1
Query:  106 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELG---KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLSWKLHY 642
            SA NCG    C    CCS++G+CG   DYC +GC+S  C     G      G  G GG  G   + +  + F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                C+  E+  AS DYCD N   +PC+   KYYGRGP+Q+SW  +Y
Sbjct:   28 SAQNCG----CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY 198          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.613e-23
Identity = 57/105 (54.29%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  103 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 399
            GSA  CG      +CPGG CCS +GWCG T DYC +GCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 74/195 (37.95%), Postives = 88/195 (45.13%), Query Frame = 1
Query:  109 AGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN----YPCRG--KYYGRGPIQLSWKLHY 642
            A NCG    C    CCS FG+CG  T YC  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C   E  G     YCD +    YPC    KYYGRGP+QLSW  +Y
Sbjct:   27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY 198          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 63/170 (37.06%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  151 CCSRFGWCGLTTDYCCEGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC--RGKYYGRGPIQLSWKLHYL 645
            CCS+ G+CG + DYC  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QLSW  +Y+
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYI 157          
BLAST of FC875483 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 56/121 (46.28%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  280 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWKLHY 642
            +  +IS  +FE +L +R         FYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y        E+G+ S             Y+GRGPIQ+S+  +Y
Sbjct:    1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD------------YFGRGPIQISYNYNY 93          
The following BLAST results are available for this feature:
BLAST of FC875483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_PHAVU1.906e-2437.30Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI5_ORYSJ2.489e-2436.17Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_POPTR1.613e-2354.29Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]
CHIP_BETVU2.107e-2337.95Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA5.190e-2237.06Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIT_AVESA5.190e-2246.28Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404D11EF CTVClemen1 Citrus clementina cDNA clone C31404D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875483 ID=FC875483; Name=FC875483; organism=Citrus clementina; type=EST; length=735bp
GATACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAG
GCTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAG
GAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAG
TGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGA
AGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCG
ACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGG
AAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGC
CAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTC
CAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCT
GCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGC
ACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCG
CTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTAC
TATGGCCGAGGTCCAATTCAACTCTCTTGGAAATTACATTACTTACGGTG
CGGAGAAAGCCTAGGGCTAGGAGAGGAGTTGTTGAACATCCAGACCTTCT
TGCTACTGATCAGTACTATCATTCAGTCAGCATCT
back to top