FC875484

Overview
NameFC875484
Unique NameFC875484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10237 contig Ccv1_Contig10237:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_LISIN (NADPH dehydrogenase OS=Listeria innocua GN=namA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 57/192 (29.69%), Postives = 88/192 (45.83%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L + Y +  + L +R+V++P+      N        H   Y S+     GL+I EAT V +  +      G+W  EQV A K +VD +H  G     Q+ H GR +    +    + I   +K   P                 LT + I ++V DF+ AA  A EAGFD IE+H AHG+L+  +   +++R
Sbjct:    4 LFSEYKLKDVTLKNRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKRLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIPFDEKSAKPV---------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPISNR 180          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: YQIG_BACSU (Probable NADH-dependent flavin oxidoreductase yqiG OS=Bacillus subtilis GN=yqiG PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 60/193 (31.09%), Postives = 91/193 (47.15%), Query Frame = 2
Query:  146 PLLTPYNMGS-LNLSDRVVLAPLTRQRSYNNVPQPHAIL-YYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL-TIYEGSVNDR 715
            PL  P+   S + +++R+ +AP+T   S  +     A L Y   R+ + G++I     V+   + +P  P I     +   K +  A+ A+G     QI H G     +  P  Q  +  +D      +  NG  IA     R LT +E+  IV  F  A R AIEAGFDG+E+HGA+G+L+   Y    N R
Sbjct:    7 PLFEPFTFKSGVTINNRIAVAPMTHYASNEDGTISEAELDYIIPRSKEMGMVITACANVTPDGKAFPGQPAIHDDSNIPGLKKLAQAIQAQGAKAVVQIHHGGIECPSELVPQ-QDVVGPSD------VFDNGKQIA-----RALTEEEVENIVKAFGEATRRAIEAGFDGVEIHGANGYLIQQFYSPKTNQR 187          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_LISMH (NADPH dehydrogenase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=namA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 57/192 (29.69%), Postives = 87/192 (45.31%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L + Y +  + L +R+V++P+      N        H   Y S+     GL+I EAT V +  +      G+W  EQV A K +VD +H  G     Q+ H GR +    +    + I   +K   P                 LT + I ++V DF+ AA  A EAGFD IE+H AHG+L+  +   + +R
Sbjct:    4 LFSEYKLKDVTLKNRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKRLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIPFDEKSAKPV---------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNR 180          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_CLOAB (NADPH dehydrogenase OS=Clostridium acetobutylicum GN=namA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 52/177 (29.38%), Postives = 87/177 (49.15%), Query Frame = 2
Query:  161 YNMGSLNLSDRVVLAPLTRQRSYN--NVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            Y + ++ L +R+V+ P+    S N  N+   H + Y ++     G +I EATG++   +      GIW+++  E    +V  V   G     Q+ H GR     Y+     P++ +        +T          P+ LT +EI +I+  F+ AA+ A +AGFD IE+HGAHG+L+
Sbjct:    7 YTIKNMCLKNRIVMPPMCMYSSDNTGNINDFHLVHYTTRSIGGVGFIIVEATGITPNGRISDKDLGIWSEKHAEGLSFLVKEVKKYGSKIAIQLNHSGR----KYEGTSGEPVAPSALAFDENSKT----------PKELTKNEIKEIILAFKAAAKRAEKAGFDAIEIHGAHGYLI 169          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_LISMO (NADPH dehydrogenase OS=Listeria monocytogenes GN=namA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 58/195 (29.74%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGR---VSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L + Y +  + L +R+V++P+      N        H   Y S+     GL+I EAT V +  +      G+W  EQV A K +V  +H  G     Q+ H GR   +  +   P+  A    +DKP+                   LT + I ++V DF+ AA  A EAGFD IE+H AHG+L+  +   + +R
Sbjct:    4 LFSEYKLKDVTLKNRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKKLVGGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIAFDEKSDKPV------------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNR 180          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACHD (NADPH dehydrogenase OS=Bacillus halodurans GN=namA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 52/182 (28.57%), Postives = 87/182 (47.80%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRS--YNNVPQPHAILYYSQRTT-KGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L + Y +  + L +R+V++P+    S   +   +P  I +Y  R   + GL+I EAT V+   +  P   GIW+ + +      V+ +HA G     Q+ H GR +  D                 P I  + +   +   P  +T ++I + +  F+L A  A +AGFD IE+HGAHG+L+
Sbjct:    5 LFSSYVVKGVTLKNRIVMSPMCMYSSDQKDGKIRPFHISHYESRAAGQVGLIIVEATAVTPQGRISPYDLGIWSDDHISGLTETVERIHAHGAKAAIQLAHAGRKAELD----------------GPIIAPSAISYDKMKTPDAMTEEQISETIEAFKLGALRAKKAGFDIIEIHGAHGYLI 170          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_GEOKA (NADPH dehydrogenase OS=Geobacillus kaustophilus GN=namA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 54/192 (28.12%), Postives = 88/192 (45.83%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY +  L L +R+V++P+           V   H I Y ++   + GL+I EATGV+   +      GIW+ + +   + +V  V   G     Q+ H GR S    +    + +   D   TP               + +T  +I + V  F+  AR A EAGFD IE+H AHG+L+  +   +++R
Sbjct:    5 LFSPYTIRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTP---------------KEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNR 181          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACP2 (NADPH dehydrogenase OS=Bacillus pumilus (strain SAFR-032) GN=namA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 55/182 (30.22%), Postives = 90/182 (49.45%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNNVP--QP-HAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L +P+ +  + L +R+V++P+    SY+     QP H   Y S+   + GL++ EA+ VS   +      GIW+ E +E +  + + + A G     Q+ H GR +  D      + I     P   Q +T          P +++ D+I   V  F+ AA  A +AGFD IE+HGAHG+L+
Sbjct:    5 LFSPWTLKGVTLKNRIVMSPMCMYSSYDRDGKLQPFHFTHYISRAQGQAGLIMVEASAVSPEGRISDQDLGIWSDEHIEGFASLNEQIKAYGTKTAIQLAHAGRKAELDGDILAPSSI-----PFDEQSKT----------PVQMSVDQIKDTVQAFQDAAVRAKKAGFDIIEIHGAHGYLI 171          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACSU (NADPH dehydrogenase OS=Bacillus subtilis GN=namA PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 48/182 (26.37%), Postives = 87/182 (47.80%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L TP  +  + L +R+V++P+    S+     +   H   Y S+   + GL+I EA+ V+   +      GIW+ E +E +  + + V  +G     Q+ H GR +  +      + I+  ++  TP                 ++ +++ + V +F+ AA  A EAGFD IE+H AHG+L+
Sbjct:    5 LFTPITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPV---------------EMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLI 171          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OYEC_SCHPO (Putative NADPH dehydrogenase C23G7.10c OS=Schizosaccharomyces pombe GN=SPBC23G7.10c PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 52/202 (25.74%), Postives = 94/202 (46.53%), Query Frame = 2
Query:  125 AIETPIIPLLTPYNMGSLNLSDRVVLAPLTRQRS--YNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDI--AQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL-TIYEGSVNDR 715
            AI  P   L TP  +  +   +R+ ++P+    +    ++   H +   +      GL++ EAT VS   +  P+  G+W + Q++  + IV+  H++      Q+ H GR ++      G    +         +     D        P +LT  +  ++V+ F +AA+ A+E GFD IE+HGAHG+L+ +    + NDR
Sbjct:   25 AIGVPQTKLFTPLKIRGVEFHNRMFVSPMCTYSADQEGHLTDFHLVHLGAMGMRGPGLVMVEATAVSPEGRISPNDSGLWMESQMKPLRRIVEFAHSQNQKIGIQLAHAGRKASTTAPYRGYTVATEAQGGWENDVYGPNEDRWDENHAQPHKLTEKQYDELVDKFVVAAKRAVEIGFDVIEIHGAHGYLISSTVSPATNDR 226          
The following BLAST results are available for this feature:
BLAST of FC875484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
NAMA_LISIN1.531e-1529.69NADPH dehydrogenase OS=Listeria innocua GN=namA PE... [more]
YQIG_BACSU1.999e-1531.09Probable NADH-dependent flavin oxidoreductase yqiG... [more]
NAMA_LISMH1.999e-1529.69NADPH dehydrogenase OS=Listeria monocytogenes sero... [more]
NAMA_CLOAB1.999e-1529.38NADPH dehydrogenase OS=Clostridium acetobutylicum ... [more]
NAMA_LISMO2.611e-1529.74NADPH dehydrogenase OS=Listeria monocytogenes GN=n... [more]
NAMA_BACHD2.611e-1528.57NADPH dehydrogenase OS=Bacillus halodurans GN=namA... [more]
NAMA_GEOKA7.596e-1528.13NADPH dehydrogenase OS=Geobacillus kaustophilus GN... [more]
NAMA_BACP29.921e-1530.22NADPH dehydrogenase OS=Bacillus pumilus (strain SA... [more]
NAMA_BACSU2.210e-1426.37NADPH dehydrogenase OS=Bacillus subtilis GN=namA P... [more]
OYEC_SCHPO1.097e-1325.74Putative NADPH dehydrogenase C23G7.10c OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionC31404D12EF CTVClemen1 Citrus clementina cDNA clone C31404D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875484 ID=FC875484; Name=FC875484; organism=Citrus clementina; type=EST; length=717bp
TCGCCGGGGAATCATTTTATTTTCAGTCGCGTTAAGGATTCTCAATTTGC
TTGTAATTCTACTAAACATGGGAAACAGAGCAGAGGAGGCTAAGCAAAAT
CAAGAAGAGAACAACGGTAACATGGCCATTGAAACTCCCATCATCCCTCT
TCTCACTCCTTACAATATGGGCAGTCTCAATCTTTCTGATAGAGTTGTTT
TAGCACCACTGACTAGACAGAGATCATACAACAATGTTCCTCAGCCACAT
GCCATTTTGTATTACTCTCAAAGAACCACCAAAGGGGGTTTGCTTATAGC
CGAAGCCACTGGAGTTTCCGACACTGCTCAAGGGTATCCAGATACACCTG
GTATCTGGACAAAGGAGCAAGTTGAAGCATGGAAACCGATTGTAGATGCT
GTTCATGCCAAAGGTGGGATCTTCTTTTGTCAGATTGGGCACGTTGGCAG
GGTTTCAAATCAAGATTATCAGCCAAATGGTCAAGCTCCAATTTCCTGTA
CAGACAAGCCATTGACACCTCAAATCCGCACTAATGGTGTTGATATTGCA
CAATTCACTCCTCCAAGGCGGCTAACGACAGATGAAATCCCTCAAATTGT
GAATGATTTCAGGCTTGCTGCAAGAAATGCAATTGAGGCTGGTTTCGATG
GCATTGAGCTCCACGGTGCACATGGCTTCCTATTGACCATTTATGAAGGA
TCAGTGAATGATCGAAC
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