FC875484

Overview
NameFC875484
Unique NameFC875484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_GEOTN (NADPH dehydrogenase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=namA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 53/192 (27.60%), Postives = 85/192 (44.27%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTR---QRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY    L L +R+V++P+           V   H I Y ++   + GL+I EATGV+   +      GIW  + +     +V  V   G     Q+ H GR S    +    + I   +   TP               + +T  +I + V  F+  AR A +AGFD IE+H AHG+L+  +   +++R
Sbjct:    5 LFSPYTTRGLTLKNRIVMSPMCMYSCDTKDGTVRTWHKIHYPARAIGQVGLIIVEATGVTPQGRISEHDLGIWDDDHIHGLHELVGLVKEHGAAIGIQLAHAGRKSEVPGEIIAPSAIPFNESSPTP---------------KEMTKADIEKTVQAFQDGARRAKKAGFDVIEIHAAHGYLINEFLSPLSNR 181          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACLD (NADPH dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=namA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 50/192 (26.04%), Postives = 87/192 (45.31%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L TP+++  + L +R+V++P+    S+     V   H   Y S+   + GL++ EAT V+   +      GIW    ++    +   +   G     Q+ H GR +  +    G + I     P     RT          P  +T ++I + V  F+  A  A  AGFD IE+HGAHG+L+  +   ++++
Sbjct:    6 LFTPWSLKGVTLKNRIVMSPMCMYSSHEKDGKVQPFHMTHYISRAVGQVGLIMVEATAVTPQGRISDQDLGIWDDAHIDGLAALTSQIKTYGSKTAIQLAHAGRKAEVEGTIYGPSAI-----PFDENSRT----------PVEMTKEDIKETVQAFKKGAERAKAAGFDIIEIHGAHGYLINEFLSPLSNK 182          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACCR (NADPH dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=namA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 51/182 (28.02%), Postives = 81/182 (44.51%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L +PY + ++ L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +   +  GIW    +E        +H  G     Q+ H GR +  D      + I   DK   P                 +   +I + +  F+ AA  + +AGFD IELHGAHG+L+
Sbjct:    5 LFSPYTIKNVTLKNRIVMSPMCMYSSGNEDGRVTNFHLIHYGTRAAGQVGLVMVEATAVLAEGRISNNDLGIWDDNLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELDTNAFAPSAIPFNDKMKIPV---------------EMNIQQIKETILAFQRAALRSKQAGFDVIELHGAHGYLI 171          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACCN (NADPH dehydrogenase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=namA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 50/192 (26.04%), Postives = 88/192 (45.83%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +P+ + ++ L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V+   +      GIW  E +E  +  V  +         Q+ H GR +     P   + I   DK   P                 ++ ++I   +  F+ AA  + +AGFD IELHGAHG+L+  +   ++++
Sbjct:    5 LFSPFTIQNVTLKNRIVMSPMCMYSSENEDGKVTNFHLIHYGTRAMGQVGLVMLEATAVAAEGRISNKDLGIWNDEHIEGLQKTVSFIKEHDSKAAIQLAHAGRKAELHTDPVAPSAIPFNDKMKVPVA---------------MSKEQIQDTITAFQKAAIRSKQAGFDVIELHGAHGYLINEFLSPLSNK 181          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OYEB_SCHPO (Putative NADPH dehydrogenase C5H10.10 OS=Schizosaccharomyces pombe GN=SPAC5H10.10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 57/192 (29.69%), Postives = 89/192 (46.35%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN--VPQPHAILYYSQRTT-KGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPN---------GQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAI-EAGFDGIELHGAHGFLL 685
            L  P  +G++ L  R+V AP TR R  +N  V       YY QR++  G LLI E+      + G+ + P ++  E VEAWKPIV A+H      F Q  ++      DY  +         G+ P+  T  P         +   +    + +T  +I + +  +  AA+ A+   G DG+E+H  +GFLL
Sbjct:   13 LFQPIKVGNMQLQHRMVHAPATRLRCLDNGLVMTDLVKEYYKQRSSIPGTLLITESLFSGAKSGGFSNIPCLYNDEHVEAWKPIVQAIHDNDCFVFIQFWNLPGELKVDYLEDQERLEKVTQGECPMDPTGLPAALG-SAYSICGEELYVDKFMTKQDIQEHITTYTEAAKRAVFGCGADGVEVHQVNGFLL 203          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACC4 (NADPH dehydrogenase OS=Bacillus cereus (strain B4264) GN=namA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 51/182 (28.02%), Postives = 81/182 (44.51%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYN---NVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L +PY + ++ L +R+V++P+    S N   +V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  D      + I   DK   P                 +   +I + +  F+ AA  + +AGFD IELHGAHG+L+
Sbjct:    5 LFSPYTIKNVTLKNRIVMSPMCMYSSGNEDGSVTNFHLIHYGTRAAGQVGLVMVEATAVLAEGRISNKDLGIWDDNLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELDTNAFAPSAIPFNDKMKIPV---------------EMNIQQIKETILAFQRAALRSKQAGFDVIELHGAHGYLI 171          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACCZ (NADPH dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=namA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 49/192 (25.52%), Postives = 89/192 (46.35%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY +  + L +R+V++P+    S N    V   H + Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++T          P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+L+  +   ++++
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLVHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAI---PFNETMKT----------PVEMSKHQIKDTILAFQQAAIRSKQAGFDVIEIHGAHGYLINEFLSPLSNK 181          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACC2 (NADPH dehydrogenase OS=Bacillus cereus (strain G9842) GN=namA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 51/182 (28.02%), Postives = 84/182 (46.15%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L +PY + ++ L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  +   N  AP +    P +  ++           P  +   +I + +  F+ AA  + +AGFD IELHGAHG+L+
Sbjct:    5 LFSPYTIKNVTLKNRIVMSPMCMYSSGNEDGRVTNFHLIHYGTRAAGQVGLVMVEATAVLAEGRISNKDLGIWDDNLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELGTNAFAPSAI---PFSDTMKI----------PVEMNIQQIKETILAFQRAALRSKQAGFDVIELHGAHGYLI 171          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACC0 (NADPH dehydrogenase OS=Bacillus cereus (strain AH820) GN=namA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 50/192 (26.04%), Postives = 89/192 (46.35%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY +  + L +R+V++P+    S N    V   H + Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++T          P  ++  +I   V  F+ AA  + +AGFD IE+HGAHG+L+  +   ++++
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLVHYGTRAAGQVGLVMIEATAVLPGGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAV---PFNETMKT----------PVEMSKHQIKDTVLAFQQAAIRSKQAGFDVIEIHGAHGYLINEFLSPLSNK 181          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NADO_THEBR (NADH oxidase OS=Thermoanaerobacter brockii PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 59/191 (30.89%), Postives = 88/191 (46.07%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPL-TRQRSYNNVPQPHAILYYSQRTTKG-GLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWK------PIVDAVHAKGGIFFCQIGHVGRVSN----QDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L +   +G+L + +R+V+ P+ T   + +       I YY  R   G GL+I E   V      YP    +  + +++  K       + +AVH+ G   F QI H GR +     +  QP   +P+ C+                  T PR LT +EI +I+  F  AA  A  A FDGIELHGAHG+L+
Sbjct:    7 LFSEGRIGNLVIRNRIVMPPMATNLANEDGSVSQRLIDYYVARARGGVGLIILENVQVD-----YPQGKNVACQLRLDDDKYMAGFFELAEAVHSYGAKIFMQIHHAGRQTTPGITEGLQPVAPSPVPCSFLG---------------TQPRELTINEIEEIIQKFVDAAVRAKGAMFDGIELHGAHGYLI 177          
The following BLAST results are available for this feature:
BLAST of FC875484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
NAMA_GEOTN1.871e-1327.60NADPH dehydrogenase OS=Geobacillus thermodenitrifi... [more]
NAMA_BACLD3.192e-1326.04NADPH dehydrogenase OS=Bacillus licheniformis (str... [more]
NAMA_BACCR5.444e-1328.02NADPH dehydrogenase OS=Bacillus cereus (strain ATC... [more]
NAMA_BACCN5.444e-1326.04NADPH dehydrogenase OS=Bacillus cereus subsp. cyto... [more]
OYEB_SCHPO7.110e-1329.69Putative NADPH dehydrogenase C5H10.10 OS=Schizosac... [more]
NAMA_BACC47.110e-1328.02NADPH dehydrogenase OS=Bacillus cereus (strain B42... [more]
NAMA_BACCZ1.027e-1125.52NADPH dehydrogenase OS=Bacillus cereus (strain ZK ... [more]
NAMA_BACC21.027e-1128.02NADPH dehydrogenase OS=Bacillus cereus (strain G98... [more]
NAMA_BACC01.027e-1126.04NADPH dehydrogenase OS=Bacillus cereus (strain AH8... [more]
NADO_THEBR1.027e-1130.89NADH oxidase OS=Thermoanaerobacter brockii PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC31404D12EF CTVClemen1 Citrus clementina cDNA clone C31404D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875484 ID=FC875484; Name=FC875484; organism=Citrus clementina; type=EST; length=717bp
TCGCCGGGGAATCATTTTATTTTCAGTCGCGTTAAGGATTCTCAATTTGC
TTGTAATTCTACTAAACATGGGAAACAGAGCAGAGGAGGCTAAGCAAAAT
CAAGAAGAGAACAACGGTAACATGGCCATTGAAACTCCCATCATCCCTCT
TCTCACTCCTTACAATATGGGCAGTCTCAATCTTTCTGATAGAGTTGTTT
TAGCACCACTGACTAGACAGAGATCATACAACAATGTTCCTCAGCCACAT
GCCATTTTGTATTACTCTCAAAGAACCACCAAAGGGGGTTTGCTTATAGC
CGAAGCCACTGGAGTTTCCGACACTGCTCAAGGGTATCCAGATACACCTG
GTATCTGGACAAAGGAGCAAGTTGAAGCATGGAAACCGATTGTAGATGCT
GTTCATGCCAAAGGTGGGATCTTCTTTTGTCAGATTGGGCACGTTGGCAG
GGTTTCAAATCAAGATTATCAGCCAAATGGTCAAGCTCCAATTTCCTGTA
CAGACAAGCCATTGACACCTCAAATCCGCACTAATGGTGTTGATATTGCA
CAATTCACTCCTCCAAGGCGGCTAACGACAGATGAAATCCCTCAAATTGT
GAATGATTTCAGGCTTGCTGCAAGAAATGCAATTGAGGCTGGTTTCGATG
GCATTGAGCTCCACGGTGCACATGGCTTCCTATTGACCATTTATGAAGGA
TCAGTGAATGATCGAAC
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