FC875484

Overview
NameFC875484
Unique NameFC875484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10237 contig Ccv1_Contig10237:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACWK (NADPH dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=namA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 47/192 (24.48%), Postives = 83/192 (43.23%), Query Frame = 2 
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY +  + L +R++++P+    S N    V   H + Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  +      + I   D+   P                 +   +I + V+ F+ AA  +  AG D IELHGAHG+L+  +   ++++
Sbjct:    5 LFSPYTIKDVTLKNRIIMSPMCMYSSENEDGQVTNFHLVHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDNLIEGLHKTTTFIHNNGAKAAIQLAHAGRKAELETDAFAPSAIPFNDRMKIPV---------------EMNKQQIKETVSAFQKAALRSKRAGVDVIELHGAHGYLINEFLSPLSNK 181
[Close]
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACHK (NADPH dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=namA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 49/192 (25.52%), Postives = 88/192 (45.83%), Query Frame = 2 
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++           P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+L+  +   ++++
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAI---PFNETMKI----------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNK 181
[Close]
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACC3 (NADPH dehydrogenase OS=Bacillus cereus (strain 03BB102) GN=namA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 49/192 (25.52%), Postives = 88/192 (45.83%), Query Frame = 2 
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++           P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+L+  +   ++++
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAV---PFNETMKI----------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNK 181
[Close]
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACAH (NADPH dehydrogenase OS=Bacillus thuringiensis (strain Al Hakam) GN=namA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 49/192 (25.52%), Postives = 88/192 (45.83%), Query Frame = 2 
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++           P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+L+  +   ++++
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAV---PFNETMKI----------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNK 181
[Close]
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACC1 (NADPH dehydrogenase OS=Bacillus cereus (strain ATCC 10987) GN=namA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 50/182 (27.47%), Postives = 83/182 (45.60%), Query Frame = 2 
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++           P  ++  +I   V  F+ AA  + +AGFD IE+HGAHG+L+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENGDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAI---PFNETMKM----------PIEMSKHQIKDTVLAFQQAAVRSKQAGFDVIEIHGAHGYLI 171
[Close]
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACAN (NADPH dehydrogenase OS=Bacillus anthracis GN=namA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 49/192 (25.52%), Postives = 88/192 (45.83%), Query Frame = 2 
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++           P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+L+  +   ++++
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAV---PFNETMKI----------PVEMSIHQIKNTILAFQQAAIRSKQAGFDVIEIHGAHGYLINEFLSPLSNK 181
[Close]
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACAC (NADPH dehydrogenase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=namA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 49/192 (25.52%), Postives = 88/192 (45.83%), Query Frame = 2 
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++           P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+L+  +   ++++
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAV---PFNETMKI----------PVEMSIHQIKNTILAFQQAAIRSKQAGFDVIEIHGAHGYLINEFLSPLSNK 181
[Close]
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACAA (NADPH dehydrogenase OS=Bacillus anthracis (strain A0248) GN=namA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 49/192 (25.52%), Postives = 88/192 (45.83%), Query Frame = 2 
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIYEGSVNDR 715
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++           P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+L+  +   ++++
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAV---PFNETMKI----------PVEMSIHQIKNTILAFQQAAIRSKQAGFDVIEIHGAHGYLINEFLSPLSNK 181
[Close]
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACCQ (NADPH dehydrogenase OS=Bacillus cereus (strain Q1) GN=namA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 49/182 (26.92%), Postives = 83/182 (45.60%), Query Frame = 2 
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L +PY +  + L +R+V++P+    S N    +   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++           P  ++  +I   V  F+ AA  + +AGFD IE+HGAHG+L+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSKNEDGQITNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKATTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAI---PFNETMKM----------PIEMSKHQIKDTVLAFQQAAVRSKQAGFDVIEIHGAHGYLI 171
[Close]
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NAMA_BACC7 (NADPH dehydrogenase OS=Bacillus cereus (strain AH187) GN=namA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 49/182 (26.92%), Postives = 83/182 (45.60%), Query Frame = 2 
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L +PY +  + L +R+V++P+    S N    +   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++           P  ++  +I   V  F+ AA  + +AGFD IE+HGAHG+L+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSKNEDGQITNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKATTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAI---PFNETMKM----------PIEMSKHQIKDTVLAFQQAAVRSKQAGFDVIEIHGAHGYLI 171
The following BLAST results are available for this feature:
BLAST of FC875484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
NAMA_BACWK2.287e-1124.48NADPH dehydrogenase OS=Bacillus weihenstephanensis... [more]
NAMA_BACHK2.987e-1125.52NADPH dehydrogenase OS=Bacillus thuringiensis subs... [more]
NAMA_BACC32.987e-1125.52NADPH dehydrogenase OS=Bacillus cereus (strain 03B... [more]
NAMA_BACAH2.987e-1125.52NADPH dehydrogenase OS=Bacillus thuringiensis (str... [more]
NAMA_BACC13.901e-1127.47NADPH dehydrogenase OS=Bacillus cereus (strain ATC... [more]
NAMA_BACAN3.901e-1125.52NADPH dehydrogenase OS=Bacillus anthracis GN=namA ... [more]
NAMA_BACAC3.901e-1125.52NADPH dehydrogenase OS=Bacillus anthracis (strain ... [more]
NAMA_BACAA3.901e-1125.52NADPH dehydrogenase OS=Bacillus anthracis (strain ... [more]
NAMA_BACCQ5.095e-1126.92NADPH dehydrogenase OS=Bacillus cereus (strain Q1)... [more]
NAMA_BACC75.095e-1126.92NADPH dehydrogenase OS=Bacillus cereus (strain AH1... [more]

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Properties
Property NameValue
Genbank descriptionC31404D12EF CTVClemen1 Citrus clementina cDNA clone C31404D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875484 ID=FC875484; Name=FC875484; organism=Citrus clementina; type=EST; length=717bp
TCGCCGGGGAATCATTTTATTTTCAGTCGCGTTAAGGATTCTCAATTTGC
TTGTAATTCTACTAAACATGGGAAACAGAGCAGAGGAGGCTAAGCAAAAT
CAAGAAGAGAACAACGGTAACATGGCCATTGAAACTCCCATCATCCCTCT
TCTCACTCCTTACAATATGGGCAGTCTCAATCTTTCTGATAGAGTTGTTT
TAGCACCACTGACTAGACAGAGATCATACAACAATGTTCCTCAGCCACAT
GCCATTTTGTATTACTCTCAAAGAACCACCAAAGGGGGTTTGCTTATAGC
CGAAGCCACTGGAGTTTCCGACACTGCTCAAGGGTATCCAGATACACCTG
GTATCTGGACAAAGGAGCAAGTTGAAGCATGGAAACCGATTGTAGATGCT
GTTCATGCCAAAGGTGGGATCTTCTTTTGTCAGATTGGGCACGTTGGCAG
GGTTTCAAATCAAGATTATCAGCCAAATGGTCAAGCTCCAATTTCCTGTA
CAGACAAGCCATTGACACCTCAAATCCGCACTAATGGTGTTGATATTGCA
CAATTCACTCCTCCAAGGCGGCTAACGACAGATGAAATCCCTCAAATTGT
GAATGATTTCAGGCTTGCTGCAAGAAATGCAATTGAGGCTGGTTTCGATG
GCATTGAGCTCCACGGTGCACATGGCTTCCTATTGACCATTTATGAAGGA
TCAGTGAATGATCGAAC
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