FC875486

Overview
NameFC875486
Unique NameFC875486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15417 contig Ccv1_Contig15417:157..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_CHICK (Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 SV=3)

HSP 1 Score: 319.316 bits (817), Expect = 1.233e-86
Identity = 156/230 (67.83%), Postives = 185/230 (80.43%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLEICLKDL++D      I KSDPVVS+RETV E+S    +SKSPNKHNRLYM+ARP  +GLAE ID G +  R + K R++ L+E++ WD   A+KIWCFGP+  GPN++ D+ KGVQYLNEIKDSVVAGFQWA+KEG L EENMRG+ F+V DV LHADAIHRGGGQ+IPTARR +YA  LTA+PRL+EP+YLVEIQ PEQ +GGIY VLN+KRGHVFEE Q  G
Sbjct:  550 GELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVSEESNVMCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVTEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGVLCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYACVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAG 778          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_BOMMO (Translation elongation factor 2 OS=Bombyx mori GN=tef2 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.588e-86
Identity = 153/230 (66.52%), Postives = 187/230 (81.30%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLEICLKDL++D      I KSDPVVS+RETV E+S +  +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D   A+KIWCFGPE  GPN++VD  KGVQYLNEIKDSVVAGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA  LTA+PRL+EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q  G
Sbjct:  536 GELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 764          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3)

HSP 1 Score: 312.383 bits (799), Expect = 1.508e-84
Identity = 152/230 (66.09%), Postives = 182/230 (79.13%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLEICL DL++D   G  +  SDPVV +RETV  KS  T +SKSPNKHNRLYM A PLEE L  AI+ G+I PRDD K R++IL+++FGWD   A+KIW FGP+T G N++VD  K VQYLNEIKDSVV+GFQWA++EG + EE MR I F + DV LHADAIHRGGGQ+IPTARRV+YA+ L A+P LLEPV+LVEIQ PEQA+GG+Y VL ++RGHVF E QRPG
Sbjct:  535 GELHLEICLNDLENDH-AGVPLTISDPVVQYRETVAGKSSMTALSKSPNKHNRLYMVAEPLEEDLCLAIEAGKITPRDDFKARARILADDFGWDVTDARKIWAFGPDTNGANLLVDQTKAVQYLNEIKDSVVSGFQWATREGPIGEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATLLAEPSLLEPVFLVEIQVPEQAMGGVYGVLTRRRGHVFGEEQRPG 763          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4)

HSP 1 Score: 311.997 bits (798), Expect = 1.969e-84
Identity = 152/230 (66.09%), Postives = 188/230 (81.74%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLEICLKDL++D      + KSDPVVS+RETV  +S +  +SKSPNKHNRL+  A+P+ +GLA+ I+ G +  RD+ K R+KIL+E++ +D   A+KIWCFGP+  GPN+++D+ KGVQYLNEIKDSVVAGFQWA++EG L++ENMRG+ F V DV LHADAIHRGGGQ+IPTARRV YAS LTA+PRLLEPVYLVEIQ PE A+GGIY VLN++RGHVFEE Q  G
Sbjct:  544 GELHLEICLKDLEEDH-ACIPLKKSDPVVSYRETVQSESNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTG 772          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 6.334e-83
Identity = 151/230 (65.65%), Postives = 179/230 (77.83%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLEICLKDLQ+D   G  +  S PVVS+RE+V E S  T +SKSPNKHNR++M A P+ E L+ AI+ G + PRDD KVR++I+++EFGWD   A+KIWCFGP+T G N+VVD  K V YLNEIKDSVVA F WASKEG + EEN+R   F + DVVLHADAIHRGGGQ+IPTARRV+YAS L A P + EPV+LVEIQ  E A+GGIYSVLN+KRGHVF E QR G
Sbjct:  534 GELHLEICLKDLQEDH-AGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVG 762          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_CRYPV (Elongation factor 2 OS=Cryptosporidium parvum PE=3 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 8.272e-83
Identity = 142/230 (61.74%), Postives = 183/230 (79.57%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELH+EICL+DLQ ++    EI+ SDP+VS+RETV+  S +T +SKSPNKHNRLYM A PL +GL + I++G++ PRDDPK RS +L +++G+DK+ A KIWCFGPET GPN++VD+  G+QYL EIKD   + FQWA+KEG L EE+MRGI F + DV LHADAIHRG GQ+ PT RRV+YA+ LTA PRLLEP++LVEI AP++ +GGIY+ LNQ+RGHVF E  + G
Sbjct:  524 GELHVEICLQDLQQEY-AQIEIVASDPIVSYRETVVNLSNQTCLSKSPNKHNRLYMTAEPLPDGLTDDIEEGKVSPRDDPKERSNLLHDKYGFDKNAAMKIWCFGPETTGPNIMVDVTTGIQYLTEIKDHCNSAFQWATKEGILCEEDMRGIRFNLLDVTLHADAIHRGAGQITPTCRRVMYAAALTASPRLLEPMFLVEISAPQEVVGGIYATLNQRRGHVFHEEPKSG 752          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 305.449 bits (781), Expect = 1.843e-82
Identity = 148/230 (64.35%), Postives = 183/230 (79.57%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLEICLKDL++D      + KSDPVVS+RETV E+S +  +SKSPNKHNRL M+A P+ +GL E ID+G +  +D+ K R++ LSE++ +D   A+KIWCFGP+  GPN ++D  K VQYLNEIKDSVVAGFQWASKEG LA+EN+RG+ F + DV LHADAIHRGGGQ+IPT RR +YA+ +TAKPRL+EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q  G
Sbjct:  536 GELHLEICLKDLEEDH-ACIPLKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEFKARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASKEGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEENQVVG 764          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_KLULA (Elongation factor 2 OS=Kluyveromyces lactis GN=EFT1 PE=3 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.842e-80
Identity = 143/230 (62.17%), Postives = 181/230 (78.70%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLEICL+DL++D   G  +  S PVV++RETV  +S +T +SKSPNKHNR+Y++A+P++E ++ AI+ G+I PRDD K R++I+++EFGWD   A+KIWCFGP+  GPN+VVD  K VQYLNEIKDSVVA FQWA+KEG +  E MR +   + DV LHADAIHRGGGQ+IPT RR  YA  L A+P++ EPV+LVEIQ PEQA+GGIYSVLN+KRG V  E QRPG
Sbjct:  534 GELHLEICLQDLENDH-AGIPLKISPPVVAYRETVEGESSQTALSKSPNKHNRIYLKAQPIDEEVSLAIEGGKINPRDDFKARARIMADEFGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEIKDSVVAAFQWATKEGPIFGEQMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLAEPKIQEPVFLVEIQCPEQAIGGIYSVLNKKRGQVVSEEQRPG 762          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_SACCA (Elongation factor 2 OS=Saccharomyces castellii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.018e-80
Identity = 142/230 (61.74%), Postives = 179/230 (77.83%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLEICL+DL++D   G  +  S PVV++RETV  +S +T +SKSPNKHNR+Y++A P+EE ++ AI+ G+I PRDD K R++++++EFGWD   A+KIWCFGP+  GPN+VVD  K VQYLNEIKDSVVA FQWA+KEG +  E MR +   + DV LHADAIHRGGGQ+IPT RR  YA  L A+P++ EPV+LVEIQ PE A+GGIYSVLN+KRG V  E QRPG
Sbjct:  534 GELHLEICLQDLENDH-AGVPLKISPPVVAYRETVETESSQTALSKSPNKHNRIYLKAEPIEEEVSLAIESGKINPRDDLKARARVMADEFGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEIKDSVVAAFQWATKEGPIFGEQMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLAEPKIQEPVFLVEIQCPESAVGGIYSVLNKKRGQVVSEEQRPG 762          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_SACKL (Elongation factor 2 OS=Saccharomyces kluyveri GN=EFT2 PE=3 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.248e-79
Identity = 141/230 (61.30%), Postives = 179/230 (77.83%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLEICL+DL++D   G  +  S PVV++RETV  +S +  +SKSPNKHNR+Y++A P++E ++ AI+ G+I PRDD K R+++++++FGWD   A+KIWCFGP+  GPN+VVD  K VQYLNEIKDSVVA FQWASKEG +  E MR +   + DV LHADAIHRGGGQ+IPT RR  YA  L A+P++ EPV+LVEIQ PEQA+GGIYSVLN+KRG V  E QRPG
Sbjct:  534 GELHLEICLQDLENDH-AGIPLKISPPVVAYRETVEGESSQVALSKSPNKHNRIYLKAEPIDEEVSLAIEAGKINPRDDFKARARVMADDFGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEIKDSVVAAFQWASKEGPIFGEQMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLAEPKIQEPVFLVEIQCPEQAVGGIYSVLNRKRGQVVSEEQRPG 762          
The following BLAST results are available for this feature:
BLAST of FC875486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
EF2_CHICK1.233e-8667.83Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 ... [more]
EF2_BOMMO3.588e-8666.52Translation elongation factor 2 OS=Bombyx mori GN=... [more]
EF2_NEUCR1.508e-8466.09Elongation factor 2 OS=Neurospora crassa GN=cot-3 ... [more]
EF2_CAEEL1.969e-8466.09Elongation factor 2 OS=Caenorhabditis elegans GN=e... [more]
EF2_SCHPO6.334e-8365.65Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_CRYPV8.272e-8361.74Elongation factor 2 OS=Cryptosporidium parvum PE=3... [more]
EF2_DROME1.843e-8264.35Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_KLULA3.842e-8062.17Elongation factor 2 OS=Kluyveromyces lactis GN=EFT... [more]
EF2_SACCA5.018e-8061.74Elongation factor 2 OS=Saccharomyces castellii GN=... [more]
EF2_SACKL4.248e-7961.30Elongation factor 2 OS=Saccharomyces kluyveri GN=E... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404E02EF CTVClemen1 Citrus clementina cDNA clone C31404E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875486 ID=FC875486; Name=FC875486; organism=Citrus clementina; type=EST; length=702bp
AGGAGAACTCCATCTTGAGATCTGTTTGAAGGATTTGCAGGATGATTTCA
TGGGTGGTGCTGAGATTATCAAATCTGATCCTGTTGTGTCCTTCCGTGAA
ACTGTCCTTGAGAAGTCCTGCCGTACTGTTATGAGCAAGTCTCCAAACAA
ACACAATCGTCTCTATATGGAAGCCCGACCATTGGAGGAAGGTCTTGCCG
AGGCAATTGATGATGGTCGTATTGGTCCAAGGGATGATCCTAAGGTTCGT
TCTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTGCCAAGAA
AATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTTGTGGATA
TGTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGTTGTTGCT
GGGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAAACATGAG
GGGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGATGCTATCC
ACAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGTCATTTATGCA
TCCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCTACTTAGTGGA
AATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGTGTTCTTAACC
AGAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGGTCCCCACTTT
AT
back to top