FC875486

Overview
NameFC875486
Unique NameFC875486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15417 contig Ccv1_Contig15417:157..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50
Identity = 98/228 (42.98%), Postives = 146/228 (64.04%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 685
            G LH+EI L  L++++  G ++I S P++ +RE++ +KS R    KSPNKHN+LY+   PL+E     I DG I    DPK R+K+L EE GW  D A++IW         N+ VD+  GVQ+L E+KD+++ GF+ A +EG LA E +RG+   + D ++H D  HRG GQ+ P  R  IYA  LTAKP LLEP+  ++I+AP + LG I +++ +KRG + + +Q+
Sbjct:  442 GPLHIEIALTFLKENY--GLDVIASQPIIVYRESIRDKS-RVFEGKSPNKHNKLYISVEPLDEKTISLIHDGIITEDMDPKQRAKVLREEAGWPTDQARRIWAIDENI---NVFVDLTTGVQHLREVKDTIIQGFRLAMREGPLAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQ 663          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.686e-49
Identity = 98/234 (41.88%), Postives = 150/234 (64.10%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+  GPN++VD     +     L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG
Sbjct:  633 GELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 865          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.508e-49
Identity = 98/234 (41.88%), Postives = 150/234 (64.10%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+  GPN++VD     +     L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG
Sbjct:  632 GELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 864          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.508e-49
Identity = 98/234 (41.88%), Postives = 150/234 (64.10%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+  GPN++VD     +     L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG
Sbjct:  633 GELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 865          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.508e-49
Identity = 98/234 (41.88%), Postives = 150/234 (64.10%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+  GPN++VD     +     L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG
Sbjct:  633 GELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 865          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.983e-49
Identity = 98/234 (41.88%), Postives = 149/234 (63.68%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GEL+L+  + DL   +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+  GPN++VD     +     L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG
Sbjct:  633 GELYLDCVMHDLPKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 865          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.065e-48
Identity = 99/236 (41.95%), Postives = 148/236 (62.71%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMV------VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GE++++  L DL+  +    EI  SDPV  F ET ++ S     S +PNK NR+ M   PLE+G++  I++G++      K  S+   + + WD   ++ IW FGP+  G N++       D+ K V  LN +K+ +  GFQW ++EG L +E +R + F + DVVL  + I+RGGGQ+IPTARRV Y+S LTA PRL+EPVY+VE+ AP  +L  IY +L ++RGHV +++ RPG
Sbjct:  646 GEMYMDCLLYDLRTLY-SEIEIRVSDPVARFCETAVDTSSIKCFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNV--LNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPG 878          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_AERPE (Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.314e-47
Identity = 99/222 (44.59%), Postives = 139/222 (62.61%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHV 667
            G LHLEI L  L++ F  G E+  S P+V +RETV ++S R    KSPNKHN+LY+   PL E     I +G +    DPK R++IL+++ GWD + A+KIW         N+ VD   GVQYL E+KD+++AGF+ A KEG LA E +RG+   + D V+H D +HRG GQ+ P  R  I+A  L  +P LLEP+  ++I+AP + L  I +VL +KRG +
Sbjct:  442 GPLHLEIALTMLREKF--GVEVKASPPIVVYRETVRQQS-RVFEGKSPNKHNKLYISVEPLNEETITLIQNGAVTEDQDPKDRARILADKAGWDYNEARKIWAIDENI---NVFVDKTAGVQYLREVKDTIIAGFRLALKEGPLAAEPVRGVKVVLHDAVIHEDPVHRGPGQLYPAVRNAIWAGILDGRPTLLEPLQKLDIRAPMEYLSNITAVLTRKRGRI 657          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_DESMO (Elongation factor 2 OS=Desulfurococcus mobilis GN=fusA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 100/227 (44.05%), Postives = 138/227 (60.79%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 682
            G LH+EI L  L+D +  G E++ S PV+ +RETV E S +    KSPNKHN+ Y+   PL E     + +G I    D + R+KIL E+ GWD D A++I          NM+VDM  GVQYL EIKD+V+ GF+ A KEG LA E +RG+   + D V+H D  HRG  Q+ P  R  I+A  LTAKP +LEP+  ++I+ P + +G I +V+ +KRG + E  Q
Sbjct:  440 GTLHIEIALTLLKDLY--GLEVVASPPVIVYRETVRESS-QVFEGKSPNKHNKFYISVAPLNEETLRLMSEGIIVEDMDARERAKILREQAGWDADEARRIMAIDENL---NMLVDMTTGVQYLREIKDTVIQGFRLAMKEGPLAMEPVRGVKVVLHDAVVHEDPAHRGPAQIFPAVRNAIFAGFLTAKPTILEPILKLDIRTPMEYIGNISTVITKKRGKLIEVQQ 660          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.379e-45
Identity = 94/230 (40.87%), Postives = 139/230 (60.43%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            G LH+EI L  L++ +  G E+  S PV+++RETV  K    V  KSPNKHN+LY+   PLE+ + E I  G I    DP+ R+K+L ++  WD D A++IW    E    N+ +D   GVQ+L E+KD+++AG++ A KEG LA+E +RG+   + D V+H D  HRG  Q+ P  R  +YAS LT  P LLEP   ++I+ P + +G +  V+ + RG + E +   G
Sbjct:  445 GMLHIEIALTQLKEVY--GLEVKVSPPVITYRETV-RKPGEKVEGKSPNKHNKLYITVEPLEKEVIEMIQKGEITDDQDPRERAKVLRDKVNWDADTARRIWAVDEENF--NIFIDKTVGVQHLREVKDTILAGWRLAMKEGPLAKEPVRGVKVILWDAVIHEDPAHRGPAQLYPAVRNAVYASMLTDSPTLLEPWQKLDIRVPNEYIGAVTGVITKHRGKILEVIDMGG 669          
The following BLAST results are available for this feature:
BLAST of FC875486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
EF2_STAMF7.068e-5042.98Elongation factor 2 OS=Staphylothermus marinus (st... [more]
U5S1_CHICK2.686e-4941.88116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE3.508e-4941.88116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN3.508e-4941.88116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN3.508e-4941.88116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB5.983e-4941.88116 kDa U5 small nuclear ribonucleoprotein compone... [more]
SN114_SCHPO5.065e-4841.95114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_AERPE7.314e-4744.59Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE... [more]
EF2_DESMO8.087e-4644.05Elongation factor 2 OS=Desulfurococcus mobilis GN=... [more]
EF2_IGNH41.379e-4540.87Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31404E02EF CTVClemen1 Citrus clementina cDNA clone C31404E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875486 ID=FC875486; Name=FC875486; organism=Citrus clementina; type=EST; length=702bp
AGGAGAACTCCATCTTGAGATCTGTTTGAAGGATTTGCAGGATGATTTCA
TGGGTGGTGCTGAGATTATCAAATCTGATCCTGTTGTGTCCTTCCGTGAA
ACTGTCCTTGAGAAGTCCTGCCGTACTGTTATGAGCAAGTCTCCAAACAA
ACACAATCGTCTCTATATGGAAGCCCGACCATTGGAGGAAGGTCTTGCCG
AGGCAATTGATGATGGTCGTATTGGTCCAAGGGATGATCCTAAGGTTCGT
TCTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTGCCAAGAA
AATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTTGTGGATA
TGTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGTTGTTGCT
GGGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAAACATGAG
GGGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGATGCTATCC
ACAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGTCATTTATGCA
TCCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCTACTTAGTGGA
AATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGTGTTCTTAACC
AGAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGGTCCCCACTTT
AT
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