FC875486

Overview
NameFC875486
Unique NameFC875486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15417 contig Ccv1_Contig15417:157..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_ARCFU (Elongation factor 2 OS=Archaeoglobus fulgidus GN=fusA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.095e-34
Identity = 84/224 (37.50%), Postives = 124/224 (55.36%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFE 673
            GELHLE+ ++ ++ D+    ++I S P+V FRETV   S   V  KSPNKHNR Y+   PL E + +   +G +  + D K R ++L E     ++ A        E    N+  D+ KG+QYLNE  + ++ GF+ A + G +A E   GI  ++ D  LH DA+HRG  QVIP  R  I+A+ L AKP LLEP   + I  P+  +G +   +  +RG + E
Sbjct:  436 GELHLEVKVEKIRRDYK--LDVITSPPIVVFRETVTGTS-PVVEGKSPNKHNRFYIVVEPLPEKVIQMFKEGVVDMKMDKKERRRLLQEAGLTSEEAAG-----AEEYYEGNLFCDVTKGIQYLNETMELILEGFREAMRAGPIAREPCMGIKVKLVDCKLHEDAVHRGPAQVIPAVRSAIFAAILQAKPALLEPYQKIFITVPQDMMGAVTREIQGRRGQILE 651          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.869e-34
Identity = 88/229 (38.43%), Postives = 129/229 (56.33%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 682
            GELHLE+ L  L+ ++    E+  S P+V +RE+V ++S   V  KSPNKHNR Y+   P+ + + +AI +G I  G   DPK  +K L+E  G D ++AK I     +    NM +D  KG+QYLNE+ D +V GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   LNQ+RG + +  Q
Sbjct:  437 GELHLEVKLHRLKTEWKLDVEV--SPPIVVYRESVTKQS-PIVEGKSPNKHNRFYITVEPMPDEIYQAIREGEIPEGRPKDPKAVAKKLAE-LGMDYEIAKGI----VDIYNGNMFLDNTKGIQYLNEVMDLLVDGFHQAMDEGPLAKEPVMKVIVRLHDAKIHEDNVHRGPAQIYPAIRSAIHCAMMKAGPVLYEPYQKVIINVPYEYMGAVSRELNQRRGQLIDMRQ 657          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 87/232 (37.50%), Postives = 129/232 (55.60%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSE--EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHL++ L  +++D+    E+  S+P+V +RETV EK       KSPNKHNR Y E  PL+  + +AI+DG I      K +  I+      G D++ A+ + C      G N++ D+ +G+QYL+E  + ++  F      G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG V E+M + G
Sbjct:  437 GELHLDVTLYRIKNDYK--IEVETSEPIVVYRETV-EKKGGPFEGKSPNKHNRFYFEVEPLKPEVIQAIEDGDIPQGSKFKDKKTIIETLVSKGIDREEARGLVCVE----GTNIMFDVTRGIQYLDETMELLIEAFTEVMNRGPLANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRILLEPVQKVFINVPQEEMGSAINEVQQRRG-VIEDMTQEG 660          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_THESM (Elongation factor 2 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=fusA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 84/229 (36.68%), Postives = 130/229 (56.77%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 682
            GELHLE+ L  L++ +  G ++  S+P+V +RE++ ++S   V  KSPNKHNR Y+   P+ + + +AI +G I  G   D KV +K L+E  G D ++A+ I     +    NM +D  KG+QYLNE+ D +V GF  A  EG LA E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   +NQ+RG + +  Q
Sbjct:  437 GELHLEVKLVHLKEQW--GVDVDVSEPIVVYRESITKQS-PIVEGKSPNKHNRFYIVVEPMPDEIYQAIREGEIPEGRPKDTKVVAKKLAE-LGMDYEIARGI----VDIYNGNMFLDNTKGLQYLNEVMDLLVDGFHQAMDEGPLAREPVMKVIVRLVDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVVINVPYEYMGSVSREMNQRRGQLIDMRQ 657          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_THEON (Elongation factor 2 OS=Thermococcus onnurineus (strain NA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 87/229 (37.99%), Postives = 129/229 (56.33%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 682
            GELHLE+ L  L+ ++    ++  S P+V +RE+V ++S   V  KSPNKHNR Y+   PL + + EAI +G I  G   DPK  +K L+E  G D ++AK I     +    N+ +D  KG+QYLNE+ D +V GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   +NQ+RG + +  Q
Sbjct:  437 GELHLEVKLYRLKTEWKLDVDV--SPPIVVYRESVTKQS-PIVEGKSPNKHNRFYITVEPLPDAIYEAIREGEIPEGRPKDPKAVAKKLAE-LGLDYEIAKGI----VDVYNGNIFLDNTKGIQYLNEVMDLLVDGFHQAMDEGPLAKEPVMKVMVRLHDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGSVSREINQRRGQLIDMRQ 657          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_THEGJ (Elongation factor 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fusA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.274e-34
Identity = 89/229 (38.86%), Postives = 128/229 (55.90%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 682
            GELHLE+ L  L+ ++    ++  S P+V +RE+V +KS   V  KSPNKHNR Y+   P+ + + EAI +G I  G   +PK  +K L+E  G D +LAK I     +    NM  D  KG+QYLNE+ D +V GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   LNQ+RG + +  Q
Sbjct:  437 GELHLEVKLYRLKTEWKLDVDV--SPPIVVYRESVTKKS-PIVEGKSPNKHNRFYITVEPMPDEIYEAIREGIIPEGRPKNPKEVAKKLAE-LGMDYELAKGI----VDVYNGNMFFDNTKGIQYLNEVMDLLVDGFHMAMDEGPLAKEPVMKVIVRLHDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSRELNQRRGQLIDMRQ 657          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_METMT (Elongation factor 2 OS=Methanococcoides methylutens GN=fusA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.603e-33
Identity = 86/225 (38.22%), Postives = 125/225 (55.56%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFE 673
            GELHLE+    ++ D   G EI  + P+V +RET+   +   V  KSPN+HNR Y+   PLE  + E I +G I  R  + + R K+++   G DKD AK+I     +    N   DM KG+Q+LNE  + V+ GF    K G L++E   G+  ++ D  LH DA+HRG  QVIP +R+ I A+ L A   L EP   V IQ P++ +GG    +  +RG + +
Sbjct:  438 GELHLEVIAHRIERD--KGVEISTTPPIVVYRETITG-TAGPVEGKSPNRHNRFYVVVEPLEPEVRELIREGEISMRMPELERREKLIAA--GLDKDEAKRI----ADIFESNAYFDMTKGIQHLNETMELVLEGFVEVMKAGPLSKEPCMGVKVKLMDAKLHEDAVHRGPAQVIPASRQAIQAAMLMADDTLFEPYQKVFIQTPQEQMGGATKEIQGRRGIIID 653          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_METAC (Elongation factor 2 OS=Methanosarcina acetivorans GN=fusA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.025e-32
Identity = 82/220 (37.27%), Postives = 121/220 (55.00%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRG 661
            GELHLE+    ++ D     EI  S P+V +RET+ +K+   +  KSPN+HNR Y+ A PL+  +  AI +G +   + P++  +    + G +K+ AK I          N+ +DM KG+QYLNE  + V+ GF+   + G L  E +  +   + D  LH DAIHRG  Q+IP AR+ I A  L A+  LLEP   V +Q P+  +GG    L  +RG
Sbjct:  438 GELHLEVIAHRIERD--KNVEITTSKPIVVYRETIKKKT-EPIEGKSPNRHNRFYIYAEPLDTEIVSAIKEGEVS-MNLPELERRQKLIDLGMEKEEAKGI----VGIFNSNIFIDMTKGIQYLNETMELVLDGFEEVMRAGPLTREPVANVKCVLVDAKLHEDAIHRGPAQIIPAARQAIQAGMLMAEDSLLEPYQKVFVQVPQLLMGGATKELQGRRG 649          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.339e-32
Identity = 84/229 (36.68%), Postives = 127/229 (55.46%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 682
            GELHLE+ L  L+ D+  G +I  S+P+V +RE++  KS   V  KSPN+HNR Y+   P+ + +  AI +G I  G   +PK  +K L+E  G D ++A+ I     +    NM +D  KGVQYLNE+ D ++ GF  A  EG LA E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   + Q+RG + +  Q
Sbjct:  437 GELHLEVKLYKLKKDW--GIDIEVSEPIVVYRESIT-KSSPMVEGKSPNRHNRFYIVVEPMPDEIYNAIKEGIIPEGRVKNPKEVAKKLAE-LGMDYEIARGI----VDIYNGNMFIDNTKGVQYLNEVMDLLIDGFHQAMDEGPLAREPVMKVIVRLLDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLVDMKQ 657          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_METMA (Elongation factor 2 OS=Methanosarcina mazei GN=fusA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.749e-32
Identity = 82/220 (37.27%), Postives = 119/220 (54.09%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRG 661
            GELHLE+    ++ D     EI  S P+V +RET+ +K+   +  KSPN+HNR Y+   PL+  +  AI +G I   + P++  +    E G DK+ AK I          N+ +D  KG+QYLNE  + V+ GF+   + G L  E +  +   + D  LH DAIHRG  Q+IP +R+ I A  L A+  LLEP   V +Q P+  +GG    L  +RG
Sbjct:  438 GELHLEVIAHRIERD--KNVEITTSKPIVVYRETIKKKT-EPIEGKSPNRHNRFYISVEPLDLEIVSAIKEGEI-TMNMPELERRQKLIELGMDKEQAKGI----AGIFNSNIFIDQTKGIQYLNETMELVLDGFEEVMRAGPLTREPVANVKCVLVDAKLHEDAIHRGPAQIIPASRQAIQAGMLMAEDSLLEPYQKVFVQVPQLLMGGATKELQGRRG 649          
The following BLAST results are available for this feature:
BLAST of FC875486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
EF2_ARCFU1.095e-3437.50Elongation factor 2 OS=Archaeoglobus fulgidus GN=f... [more]
EF2_PYRKO1.869e-3438.43Elongation factor 2 OS=Pyrococcus kodakaraensis GN... [more]
EF2_THEVO5.437e-3437.50Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_THESM5.437e-3436.68Elongation factor 2 OS=Thermococcus sibiricus (str... [more]
EF2_THEON5.437e-3437.99Elongation factor 2 OS=Thermococcus onnurineus (st... [more]
EF2_THEGJ9.274e-3438.86Elongation factor 2 OS=Thermococcus gammatolerans ... [more]
EF2_METMT4.603e-3338.22Elongation factor 2 OS=Methanococcoides methyluten... [more]
EF2_METAC1.025e-3237.27Elongation factor 2 OS=Methanosarcina acetivorans ... [more]
EF2_PYRHO1.339e-3236.68Elongation factor 2 OS=Pyrococcus horikoshii GN=fu... [more]
EF2_METMA1.749e-3237.27Elongation factor 2 OS=Methanosarcina mazei GN=fus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404E02EF CTVClemen1 Citrus clementina cDNA clone C31404E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875486 ID=FC875486; Name=FC875486; organism=Citrus clementina; type=EST; length=702bp
AGGAGAACTCCATCTTGAGATCTGTTTGAAGGATTTGCAGGATGATTTCA
TGGGTGGTGCTGAGATTATCAAATCTGATCCTGTTGTGTCCTTCCGTGAA
ACTGTCCTTGAGAAGTCCTGCCGTACTGTTATGAGCAAGTCTCCAAACAA
ACACAATCGTCTCTATATGGAAGCCCGACCATTGGAGGAAGGTCTTGCCG
AGGCAATTGATGATGGTCGTATTGGTCCAAGGGATGATCCTAAGGTTCGT
TCTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTGCCAAGAA
AATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTTGTGGATA
TGTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGTTGTTGCT
GGGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAAACATGAG
GGGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGATGCTATCC
ACAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGTCATTTATGCA
TCCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCTACTTAGTGGA
AATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGTGTTCTTAACC
AGAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGGTCCCCACTTT
AT
back to top