FC875486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_HALMA (Elongation factor 2 OS=Haloarcula marismortui GN=fusA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.626e-31 Identity = 83/230 (36.09%), Postives = 123/230 (53.48%), Query Frame = 2 Query: 2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691 GELHLE+ + ++ + G I +P+V +RE E S R V +SPN HNR Y+ PL E + E I G D P++ + +E G DKD ++ I G N+++D KG+Q+LNE + V+ G + A +G LA E ++G + D LH DAIHRG QVIP R ++ S + A +LLEP+ V I P +G + +RG V ++M + G Sbjct: 438 GELHLEVIGQRIERN--QGIPINTGEPIVVYREAPQEDS-REVEGRSPNNHNRFYISIEPLGEDIVETIKMGEAS-MDMPELERREALQEAGMDKDDSQNI----EHIHGTNILLDETKGIQHLNETMELVIEGLEEALDDGPLASEPVQGSLIRLHDARLHEDAIHRGPAQVIPAVREAVHNSLIDASIKLLEPIQQVRIDVPNDHMGAASGEIQGRRGRV-DDMYQEG 658
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 3.413e-28 Identity = 77/230 (33.48%), Postives = 123/230 (53.48%), Query Frame = 2 Query: 2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691 GELHLE+ + ++ + G + +P+V +RET S + V SPN+HN+ Y+ L + + E I G + D P+ + + +E G DK+ ++ + IG N+ +D KG+Q+LNE + VV G + ++G LA E + G + D LH DAIHRG QVIP R ++ + + A RLLEP+ V I P + +G + +RG V ++M + G Sbjct: 438 GELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG 658
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.413e-28 Identity = 77/230 (33.48%), Postives = 123/230 (53.48%), Query Frame = 2 Query: 2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691 GELHLE+ + ++ + G + +P+V +RET S + V SPN+HN+ Y+ L + + E I G + D P+ + + +E G DK+ ++ + IG N+ +D KG+Q+LNE + VV G + ++G LA E + G + D LH DAIHRG QVIP R ++ + + A RLLEP+ V I P + +G + +RG V ++M + G Sbjct: 438 GELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG 658
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27 Identity = 78/230 (33.91%), Postives = 122/230 (53.04%), Query Frame = 2 Query: 2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSE---EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 682 GELH+E+ + + + G E+ +P+V +RE V S V KSPNKHNRLY A PL+E + A +G I D K K + E G +++ AK++ N++++M +G+ L+E ++ ++ GF+ A K G LA E +G+ ++ D V H DAIHRG Q+IP R + + A LLEP+ V I P+ +G L+ +RG + + Q Sbjct: 440 GELHIEV-ITNTKIGRDAGVEVDVGEPIVVYREAVNGVSPE-VEGKSPNKHNRLYFVAEPLDECVYNAHVEGLIKDEDFKKKTPKEVETKLVEIGMNREEAKRVMTI----YEGNVLLNMTRGIVQLDEARELIIEGFKEAVKNGPLAAEKCQGVKVKLMDAVFHEDAIHRGPAQLIPAVRTGVRDAIAQANVGLLEPIQNVYISTPQDYMGDAMKELSNRRGQILDMEQ 663
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23 Identity = 71/230 (30.87%), Postives = 116/230 (50.43%), Query Frame = 2 Query: 2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGL----AEAIDDGRIGPRDDPKVRSKILSE--EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFE 673 G+LHLEI +++DF +II S+P+V +RE+V + V KSPNK N+ Y+ + + L E + G + K+ I+ G+ ++ A++ E NM DM +G+ ++ E+ D V+ F G +A E G+ ++ D LH DAIHRG GQVIP R I + A L EPV ++ + P +G + +++N +RG + + Sbjct: 450 GDLHLEIVEYRIKNDFK--VDIITSNPIVVYRESV-KGQAGPVEGKSPNKLNKFYITVEKMPDELYWKLREKLLKGELPEGKIKKMNEDIIKHLMSLGFTREEAQRCKVIYRE----NMFFDMTRGIIHIGEVIDMVMDAFMQVMDHGPIAWEPCIGLIVKLTDAQLHEDAIHRGPGQVIPAVREAIKLAMKDAGLVLYEPVQVILVDVPPDYIGDVTALINSRRGAILD 672
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: SN114_YEAST (114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19 Identity = 66/239 (27.62%), Postives = 119/239 (49.79%), Query Frame = 2 Query: 2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTV-MSKSPNKHNR-------LYMEARPLEEGLAEAIDDGRIGP----------RDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADA-IHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRG 661 GEL+++ L DL+ + EI SDP+ F E+ +S ++ +S S ++ + + A P++ + + + +G D+P+ SKIL E+GWD ++ +W F + N + + L++ K+ ++ GF WA KEG LAEE + G+ +++ + + +D I Q+IP ++ Y LTA P LLEP+Y V+I L + ++ ++RG Sbjct: 648 GELYMDCLLYDLRASY-AKIEIKISDPLTVFSESCSNESFASIPVSNSISRLGEENLPGLSISVAAEPMDSKMIQDLSRNTLGKGQNCLDIDGIMDNPRKLSKILRTEYGWDSLASRNVWSFYNGNVLINDTLPDEISPELLSKYKEQIIQGFYWAVKEGPLAEEPIYGVQYKLLSISVPSDVNIDVMKSQIIPLMKKACYVGLLTAIPILLEPIYEVDITVHAPLLPIVEELMKKRRG 885
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16 Identity = 78/301 (25.91%), Postives = 125/301 (41.53%), Query Frame = 2 Query: 2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE-------------------------------------------KSCRTVMSKSPN--KHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEE---FGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYL-----------NEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRG---------GGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGPHF 700 GE+HLE CLKDL++ F EI S P+V +RET + K +T+ + S N K NR + + L + + E + + R SK+L EE G K+ I FGP+ +GPN++ D K ++ +++ + VV FQ + +G L E ++GIC + + D+ GQVI + I L PRL+ +Y ++QA + LG +Y V++++RG V +E + G F Sbjct: 609 GEIHLERCLKDLRERF-AKIEIQASQPLVPYRETTIATPDLLAKNKELSIGFVTATLPVGGVTIGITVTPLSGSVVDFLLKHSKTIENVSSNFSKKNRNVVVSESLTKSMEEVLTPEKFYER-----LSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPF 903 The following BLAST results are available for this feature:
BLAST of FC875486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875486 ID=FC875486; Name=FC875486; organism=Citrus clementina; type=EST; length=702bpback to top |