FC875486

Overview
NameFC875486
Unique NameFC875486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15417 contig Ccv1_Contig15417:157..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_HALMA (Elongation factor 2 OS=Haloarcula marismortui GN=fusA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.626e-31
Identity = 83/230 (36.09%), Postives = 123/230 (53.48%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLE+  + ++ +   G  I   +P+V +RE   E S R V  +SPN HNR Y+   PL E + E I  G     D P++  +   +E G DKD ++ I        G N+++D  KG+Q+LNE  + V+ G + A  +G LA E ++G    + D  LH DAIHRG  QVIP  R  ++ S + A  +LLEP+  V I  P   +G     +  +RG V ++M + G
Sbjct:  438 GELHLEVIGQRIERN--QGIPINTGEPIVVYREAPQEDS-REVEGRSPNNHNRFYISIEPLGEDIVETIKMGEAS-MDMPELERREALQEAGMDKDDSQNI----EHIHGTNILLDETKGIQHLNETMELVIEGLEEALDDGPLASEPVQGSLIRLHDARLHEDAIHRGPAQVIPAVREAVHNSLIDASIKLLEPIQQVRIDVPNDHMGAASGEIQGRRGRV-DDMYQEG 658          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.413e-28
Identity = 77/230 (33.48%), Postives = 123/230 (53.48%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLE+  + ++ +   G  +   +P+V +RET    S + V   SPN+HN+ Y+    L + + E I  G +   D P+   + + +E G DK+ ++ +       IG N+ +D  KG+Q+LNE  + VV G   + ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G
Sbjct:  438 GELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG 658          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.413e-28
Identity = 77/230 (33.48%), Postives = 123/230 (53.48%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 691
            GELHLE+  + ++ +   G  +   +P+V +RET    S + V   SPN+HN+ Y+    L + + E I  G +   D P+   + + +E G DK+ ++ +       IG N+ +D  KG+Q+LNE  + VV G   + ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G
Sbjct:  438 GELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG 658          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 78/230 (33.91%), Postives = 122/230 (53.04%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSE---EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 682
            GELH+E+ + + +     G E+   +P+V +RE V   S   V  KSPNKHNRLY  A PL+E +  A  +G I   D  K   K +     E G +++ AK++          N++++M +G+  L+E ++ ++ GF+ A K G LA E  +G+  ++ D V H DAIHRG  Q+IP  R  +  +   A   LLEP+  V I  P+  +G     L+ +RG + +  Q
Sbjct:  440 GELHIEV-ITNTKIGRDAGVEVDVGEPIVVYREAVNGVSPE-VEGKSPNKHNRLYFVAEPLDECVYNAHVEGLIKDEDFKKKTPKEVETKLVEIGMNREEAKRVMTI----YEGNVLLNMTRGIVQLDEARELIIEGFKEAVKNGPLAAEKCQGVKVKLMDAVFHEDAIHRGPAQLIPAVRTGVRDAIAQANVGLLEPIQNVYISTPQDYMGDAMKELSNRRGQILDMEQ 663          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 71/230 (30.87%), Postives = 116/230 (50.43%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGL----AEAIDDGRIGPRDDPKVRSKILSE--EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFE 673
            G+LHLEI    +++DF    +II S+P+V +RE+V +     V  KSPNK N+ Y+    + + L     E +  G +      K+   I+      G+ ++ A++      E    NM  DM +G+ ++ E+ D V+  F      G +A E   G+  ++ D  LH DAIHRG GQVIP  R  I  +   A   L EPV ++ +  P   +G + +++N +RG + +
Sbjct:  450 GDLHLEIVEYRIKNDFK--VDIITSNPIVVYRESV-KGQAGPVEGKSPNKLNKFYITVEKMPDELYWKLREKLLKGELPEGKIKKMNEDIIKHLMSLGFTREEAQRCKVIYRE----NMFFDMTRGIIHIGEVIDMVMDAFMQVMDHGPIAWEPCIGLIVKLTDAQLHEDAIHRGPGQVIPAVREAIKLAMKDAGLVLYEPVQVILVDVPPDYIGDVTALINSRRGAILD 672          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: SN114_YEAST (114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 66/239 (27.62%), Postives = 119/239 (49.79%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTV-MSKSPNKHNR-------LYMEARPLEEGLAEAIDDGRIGP----------RDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADA-IHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRG 661
            GEL+++  L DL+  +    EI  SDP+  F E+   +S  ++ +S S ++          + + A P++  + + +    +G            D+P+  SKIL  E+GWD   ++ +W F    +  N  +      + L++ K+ ++ GF WA KEG LAEE + G+ +++  + + +D  I     Q+IP  ++  Y   LTA P LLEP+Y V+I      L  +  ++ ++RG
Sbjct:  648 GELYMDCLLYDLRASY-AKIEIKISDPLTVFSESCSNESFASIPVSNSISRLGEENLPGLSISVAAEPMDSKMIQDLSRNTLGKGQNCLDIDGIMDNPRKLSKILRTEYGWDSLASRNVWSFYNGNVLINDTLPDEISPELLSKYKEQIIQGFYWAVKEGPLAEEPIYGVQYKLLSISVPSDVNIDVMKSQIIPLMKKACYVGLLTAIPILLEPIYEVDITVHAPLLPIVEELMKKRRG 885          
BLAST of FC875486 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 78/301 (25.91%), Postives = 125/301 (41.53%), Query Frame = 2
Query:    2 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE-------------------------------------------KSCRTVMSKSPN--KHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEE---FGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYL-----------NEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRG---------GGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGPHF 700
            GE+HLE CLKDL++ F    EI  S P+V +RET +                                            K  +T+ + S N  K NR  + +  L + + E +   +   R      SK+L EE    G  K+    I  FGP+ +GPN++ D  K ++             +++ + VV  FQ  + +G L  E ++GIC  +    +  D+              GQVI   +  I    L   PRL+  +Y  ++QA  + LG +Y V++++RG V +E  + G  F
Sbjct:  609 GEIHLERCLKDLRERF-AKIEIQASQPLVPYRETTIATPDLLAKNKELSIGFVTATLPVGGVTIGITVTPLSGSVVDFLLKHSKTIENVSSNFSKKNRNVVVSESLTKSMEEVLTPEKFYER-----LSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPF 903          
The following BLAST results are available for this feature:
BLAST of FC875486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
EF2_HALMA5.626e-3136.09Elongation factor 2 OS=Haloarcula marismortui GN=f... [more]
EF2_HALSA3.413e-2833.48Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS33.413e-2833.48Elongation factor 2 OS=Halobacterium salinarum (st... [more]
EF2_META31.297e-2733.91Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
EF2_NANEQ7.365e-2330.87Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
SN114_YEAST1.698e-1927.62114 kDa U5 small nuclear ribonucleoprotein compone... [more]
RIA1_SCHPO2.295e-1625.91Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC31404E02EF CTVClemen1 Citrus clementina cDNA clone C31404E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875486 ID=FC875486; Name=FC875486; organism=Citrus clementina; type=EST; length=702bp
AGGAGAACTCCATCTTGAGATCTGTTTGAAGGATTTGCAGGATGATTTCA
TGGGTGGTGCTGAGATTATCAAATCTGATCCTGTTGTGTCCTTCCGTGAA
ACTGTCCTTGAGAAGTCCTGCCGTACTGTTATGAGCAAGTCTCCAAACAA
ACACAATCGTCTCTATATGGAAGCCCGACCATTGGAGGAAGGTCTTGCCG
AGGCAATTGATGATGGTCGTATTGGTCCAAGGGATGATCCTAAGGTTCGT
TCTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTGCCAAGAA
AATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTTGTGGATA
TGTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGTTGTTGCT
GGGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAAACATGAG
GGGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGATGCTATCC
ACAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGTCATTTATGCA
TCCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCTACTTAGTGGA
AATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGTGTTCTTAACC
AGAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGGTCCCCACTTT
AT
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