FC875490

Overview
NameFC875490
Unique NameFC875490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10234 contig Ccv1_Contig10234:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SEC22_YARLI (Protein transport protein SEC22 OS=Yarrowia lipolytica GN=SEC22 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.865e-39
Identity = 80/182 (43.96%), Postives = 126/182 (69.23%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQ-IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MV  T+I R +DGLPL+  +DDG++  +    K+Q K + + LS   N A R SIE+G YV HY+++  + Y  + + +YP+KLAF YL++L  EF++ +G + ++   RPY F++FDTF+QKTK++YQDTR   N+ KLN EL +V ++MT+N++++L  G  LD +S++SS L +ES+ Y
Sbjct:    1 MVLSTLIMRASDGLPLSASVDDGQE--NLSEQKKQCKLVTQKLSA--NSADRASIESGNYVIHYLMKDGIVYYCISESSYPRKLAFSYLDELDREFQKSHGQEALKEGVRPYKFVEFDTFMQKTKRVYQDTRATHNLDKLNTELQDVTRVMTKNIEDLLHRGHSLDHMSDLSSNLRTESKKY 178          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SEC22_SCHPO (Protein transport protein sec22 OS=Schizosaccharomyces pombe GN=sec22 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.251e-35
Identity = 73/169 (43.20%), Postives = 113/169 (66.86%), Query Frame = 1
Query:  184 LPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQ-IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            LPLA  +DD    R+ E +K+Q K + K LS       R SIE+G Y FHY+I+  +CYL +C+++YP+KLAF YLE+L  EF    G + ++   RPYAF++FDTF+QK+K++Y   R   N+ KLN EL +V ++MT+N++++L  G+ L++++++SS L   S  Y
Sbjct:    7 LPLAASVDDESTERNLESHKKQAKLILKRLS--PTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKY 173          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SEC22_ASHGO (Protein transport protein SEC22 OS=Ashbya gossypii GN=SEC22 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.864e-34
Identity = 74/182 (40.66%), Postives = 118/182 (64.84%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQ-IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            M+K T+I R  DGLPL   +DD  D   A+  K++VK L    +     A+  ++E+G Y  HY+ +  V Y+ + +R YP+ LAF YL ++++EFE   G + ++ + RPYAF+ FD F+QKTKK+Y D R Q N+ +LN +L  V QIMT+N++++L  G+ LD++S++S+ L  +S+ Y
Sbjct:    1 MIKSTLIFR-DDGLPLCSSVDDDTDPSLADQ-KKKVKVLISRFT--PQSANEATLESGAYEMHYVRQQSVVYIVIVERGYPRNLAFAYLANVRHEFEHSYGNEYVKPSVRPYAFVSFDNFLQKTKKIYNDKRVQGNLDQLNSDLLGVKQIMTKNIEDLLYRGDSLDRMSDLSASLRQDSKKY 178          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SEC22_KLULA (Protein transport protein SEC22 OS=Kluyveromyces lactis GN=SEC22 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.208e-32
Identity = 74/182 (40.66%), Postives = 113/182 (62.09%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETA-ARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            M++ T+I R  DGLPL   +DD  D    E  K++VK L    +     A+  ++E+G +  HYI    V Y+ + +R YP+ LAF YL D++ EFE   G Q+  +  RPY F+ FD F+QKTKK+Y D R Q N+ +LN +L  V QIMT+N++++L  G+ LD++S+MS+ L  +++ Y
Sbjct:    1 MIRSTLIFR-EDGLPLCASVDDDTDPSLQEQ-KKKVKILISRFT--PTSANEATVESGDFEIHYIRLNTVVYIVVAERNYPRNLAFSYLADIQQEFEHSYGGQLSKSNVRPYEFVSFDNFLQKTKKVYNDKRVQGNMDQLNQDLKGVKQIMTKNIEDLLYRGDSLDKMSDMSASLRQDAKKY 178          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SEC22_YEAST (Protein transport protein SEC22 OS=Saccharomyces cerevisiae GN=SEC22 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 72/182 (39.56%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQI-ETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            M+K T+I R  DGLPL   +D+  D    E  KQ+VK +   L+     A+  ++E+G +  HY+ +  V Y  +C+  YP+ LAF YL D+  EFE     +  +   RPY F+ FD F+Q TKK Y D + Q N+ +LN EL  V QIM++N++++L  G+ LD++S+MSS L   S+ Y
Sbjct:    1 MIKSTLIYR-EDGLPLCTSVDNENDPSLFEQ-KQKVKIVVSRLT--PQSATEATLESGSFEIHYLKKSMVYYFVICESGYPRNLAFSYLNDIAQEFEHSFANEYPKPTVRPYQFVNFDNFLQMTKKSYSDKKVQDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLDKMSDMSSSLKETSKRY 178          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SEC22_CANGA (Protein transport protein SEC22 OS=Candida glabrata GN=SEC22 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.600e-28
Identity = 66/182 (36.26%), Postives = 106/182 (58.24%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQI-ETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            M+K T++ R  DGLPL   +DD  D+ D  + +Q+ +            A+  ++E+     HYI +  V Y  +C+  YP+ LAF YL D+  EF+     ++ +   RPYAF  FDTF+Q+TKK Y D + Q N+ +LN EL  V QIM++N++++L  G+ L+++ +MS+ L   S+ Y
Sbjct:    1 MIKSTVVYR-DDGLPLCSSVDD--DISDLSLNEQKKRIKMVVSRMTPQSANEATLESKDSEIHYIRQQGVIYFVICEAGYPRNLAFSYLNDVAVEFQHSYSNELSKPTIRPYAFASFDTFLQRTKKAYSDKKVQDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLEKMDDMSNSLKISSKKY 179          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22A_MOUSE (Vesicle-trafficking protein SEC22a OS=Mus musculus GN=Sec22a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.301e-16
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNE-ASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 582
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG Y  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVIRVRDGLPLSASTD-----YEQSTGMQECRKYFKMLSRKLAQFPDRCTLKTGRYNINFISSLGVSYMMLCSENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQMEI 145          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22A_HUMAN (Vesicle-trafficking protein SEC22a OS=Homo sapiens GN=SEC22A PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEA-SRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 582
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG Y  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVIRVRDGLPLSASTD-----YEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEI 145          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22A_MACFA (Vesicle-trafficking protein SEC22a OS=Macaca fascicularis GN=SEC22A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEA-SRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 582
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG Y  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVIRVRDGLPLSASTD-----YEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTDNYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEI 145          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22A_RAT (Vesicle-trafficking protein SEC22a OS=Rattus norvegicus GN=Sec22a PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNE-ASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 582
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG +  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVVRVRDGLPLSASTDC-----EQSAGVQECRKYFKMLSRKLAQFPDRCTLKTGRHNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQMEI 145          
The following BLAST results are available for this feature:
BLAST of FC875490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SEC22_YARLI1.865e-3943.96Protein transport protein SEC22 OS=Yarrowia lipoly... [more]
SEC22_SCHPO1.251e-3543.20Protein transport protein sec22 OS=Schizosaccharom... [more]
SEC22_ASHGO6.864e-3440.66Protein transport protein SEC22 OS=Ashbya gossypii... [more]
SEC22_KLULA2.208e-3240.66Protein transport protein SEC22 OS=Kluyveromyces l... [more]
SEC22_YEAST4.604e-3039.56Protein transport protein SEC22 OS=Saccharomyces c... [more]
SEC22_CANGA9.600e-2836.26Protein transport protein SEC22 OS=Candida glabrat... [more]
SC22A_MOUSE1.301e-1635.14Vesicle-trafficking protein SEC22a OS=Mus musculus... [more]
SC22A_HUMAN2.218e-1635.14Vesicle-trafficking protein SEC22a OS=Homo sapiens... [more]
SC22A_MACFA3.784e-1635.14Vesicle-trafficking protein SEC22a OS=Macaca fasci... [more]
SC22A_RAT8.430e-1634.46Vesicle-trafficking protein SEC22a OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC31404E06EF CTVClemen1 Citrus clementina cDNA clone C31404E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875490 ID=FC875490; Name=FC875490; organism=Citrus clementina; type=EST; length=689bp
GATCCCTTCATTTGATACACAGCTCTTTTCTCTCTCTGTCGACCCTTGTC
TTCTCTCTTCTTCAGATCGTTGAATTCGCGTAGAAAATCCCAAATGCAAA
AAGGGTGATTTGGTGTAGCAGAGGAATTTTAAAGTGAGCCAAAAATGGTG
AAGATGACGATGATTGCCCGTGTTACTGATGGTCTTCCATTGGCGGAGGG
ACTGGATGATGGTCGTGATTTGAGAGATGCTGAGATGTACAAGCAACAAG
TCAAGGCCTTGTTTAAGAATCTCTCGAGAGGCCAGAATGAGGCTTCAAGG
ATGTCAATTGAGACAGGACCTTATGTTTTCCATTATATCATTGAAGGACG
TGTTTGTTACTTGACAATGTGCGACCGTGCTTATCCCAAAAAGCTGGCCT
TTCAATACTTGGAAGACCTCAAGAACGAATTTGAGCGTGTTAATGGGGCT
CAGATTGAAACTGCTGCCAGGCCTTACGCTTTCATAAAATTTGATACATT
CATACAGAAAACAAAGAAATTGTACCAGGACACGCGTACCCAGCGGAATA
TTGCCAAGTTGAATGATGAACTTTATGAGGTCCACCAGATAATGACCCGG
AATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTGA
AATGTCCAGTCGGTTGACATCAGAGTCGCGCATTTATGC
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