FC875492

Overview
NameFC875492
Unique NameFC875492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875492_ssr25 microsatellite FC875492_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr124 microsatellite FC875492_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr185 microsatellite FC875492_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.293e-43
Identity = 99/183 (54.10%), Postives = 116/183 (63.39%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMD-FFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD CVAD  SP+ VNGF C    +   D FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP GL+HFQ N N + PA  IA  +SQ  G   IA  +F S PP+++ VL K F
Sbjct:   22 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAF 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.179e-42
Identity = 97/183 (53.01%), Postives = 116/183 (63.39%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMD-FFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD CVAD  SP+ VNGF C    +   D FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP GL+HFQ N N + PA  +A  +SQ  G   IA  +F S PP+++ +L K F
Sbjct:   23 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAF 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.179e-42
Identity = 99/188 (52.66%), Postives = 124/188 (65.96%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPV-ATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD CVAD  SP+ VNGFPCK   + +  DFF +  L KP+  T +  GS VT  NV  + GLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+      N L +K++ KG+ FVFP+GL+HFQ N + + PA  IA  +SQ  G   IA  +F S  P+++ VL K F
Sbjct:   22 ASDPSPLQDFCVADRNSPVHVNGFPCKDAKDVNVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNSPISDDVLAKAF 209          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.540e-42
Identity = 99/188 (52.66%), Postives = 124/188 (65.96%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPV-ATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD CVAD  SP++VNG PCK   + S  DFF +  L KP+  T +  GS VT  NV  + GLNTL +S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+      N L +K++ KG+ FVFP+GL+HFQ N + + PA  IA  +SQ  G   IA  +F S PP+++ VL K F
Sbjct:   22 ASDPSPLQDFCVADKHSPVRVNGLPCKDAKDVSVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLSISMARIDYAPKGQNPPHTHPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSHPPISDDVLAKAF 209          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.011e-42
Identity = 94/185 (50.81%), Postives = 116/185 (62.70%), Query Frame = 1
Query:  181 NTAAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            N  A+DP  LQD CVAD  S + VNGF CK  A  +  DFF   L     T+N  GS VT  NV  I GLNTLG+SLAR+DYAP G+NPPH HPRATEI+ +LEG L VGF T+   N L +K + KG+ FVFP+GL+HFQ N G      +A  +SQ  G   IA  +F S P +++ +L K F
Sbjct:   18 NAFASDPSQLQDFCVADKMSQVLVNGFACKDPAAITVEDFFFSGLHMAGNTSNRQGSAVTGVNVAQISGLNTLGISLARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAF 202          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.431e-42
Identity = 97/183 (53.01%), Postives = 115/183 (62.84%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPC--KANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD CVAD+ SP+ VNGF C    + +   FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N   SK + KG+ FVFP GL+HFQ N N   PA  IA  +SQ  G   IA  +F S PP+++ VL K F
Sbjct:   22 ASDPSPLQDFCVADMHSPVLVNGFACLNPKDVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPDNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGSKPPISDDVLAKAF 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.643e-42
Identity = 92/191 (48.17%), Postives = 118/191 (61.78%), Query Frame = 1
Query:  181 NTAAADPEMLQDVCVADL--------TSPIKVNGFPCKANFSEM--DFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            +T  ADPE +QD CVA +         +     GFPCK   + +  DFF   LA    T+N FG  VTAAN +T PGLNTLGVS+ R+D APGG+NP H+HPRATE++ V+ G++  GF +TA    SK + +GE FV PRG++HFQ N G V A VI  FNSQ+ G      TLF S P + + VL K+F
Sbjct:   21 STCIADPEPVQDFCVAVVPRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSF 211          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.224e-41
Identity = 93/182 (51.10%), Postives = 114/182 (62.64%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTK 717
            A+DP+ LQD CVADL    + VNG PCK      D   FS KLAK   T+   GS VT  +V   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE F+ PRGL+HFQ N G   AS++  FNSQ  G   + LTLF S PP+   VLTK
Sbjct:   23 ASDPDPLQDFCVADLDGKAVSVNGHPCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLTK 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.882e-40
Identity = 92/182 (50.55%), Postives = 113/182 (62.09%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPVATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTK 717
            A DP+ LQD CVADL S + +NG+PCK   +  D   FS +LA     N N  GS VT  +V   PG+NTLGVS+ RID+APGG NPPH HPRATE+  VL G+L VG      T N   S+ ++ GE FV PRGL+HFQ N G   A+++  FNSQ  G   + LTLF S PP+   VL K
Sbjct:   26 ANDPDPLQDFCVADLDSEVTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVK 207          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GER2_WHEAT (Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.211e-40
Identity = 92/182 (50.55%), Postives = 112/182 (61.54%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTK 717
            A DP+ LQD CVADL    + VNG  CK      D   FS KLAK   T+   GS VT  +V   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE F+ PRGL+HFQ N G   AS++  FNSQ  G   + LTLF S PP+   VLTK
Sbjct:   23 ATDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLTK 204          
The following BLAST results are available for this feature:
BLAST of FC875492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL88_ORYSJ5.293e-4354.10Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL87_ORYSJ1.179e-4253.01Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL122_ORYSJ1.179e-4252.66Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]
GL124_ORYSJ1.540e-4252.66Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
GL21_ORYSJ2.011e-4250.81Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL811_ORYSJ3.431e-4253.01Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]
GL38_ORYSJ7.643e-4248.17Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
OXO2_HORVU2.224e-4151.10Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL33_ORYSJ1.882e-4050.55Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GER2_WHEAT3.211e-4050.55Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC31404E08EF CTVClemen1 Citrus clementina cDNA clone C31404E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875492 ID=FC875492; Name=FC875492; organism=Citrus clementina; type=EST; length=733bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGTAGCCACAAACAACACGTTTGGTTCAACAGT
GACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGGG
GACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGG
AATATGTATTGACTAAGACTTTCCCAGATGGTA
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