FC875492

Overview
NameFC875492
Unique NameFC875492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875492_ssr25 microsatellite FC875492_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr124 microsatellite FC875492_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr185 microsatellite FC875492_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.342e-40
Identity = 94/185 (50.81%), Postives = 113/185 (61.08%), Query Frame = 1
Query:  190 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVA  DL + + VNG  CK        DFF   L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AG +SQ  G   IA T+F STPP+   +L + F
Sbjct:   22 ANDPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAF 206          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.594e-39
Identity = 94/185 (50.81%), Postives = 113/185 (61.08%), Query Frame = 1
Query:  190 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVA  D  + + VNG  CK        DFFS  L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AG +SQ  G   IA T+F STPP+   +L + F
Sbjct:   21 AYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAF 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.594e-39
Identity = 94/185 (50.81%), Postives = 113/185 (61.08%), Query Frame = 1
Query:  190 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVA  D  + + VNG  CK        DFFS  L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AG +SQ  G   IA T+F STPP+   +L + F
Sbjct:   21 AYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAF 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.594e-39
Identity = 93/185 (50.27%), Postives = 114/185 (61.62%), Query Frame = 1
Query:  190 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVA  DL + + VNG  CK        DFF   L +  +TNN   S VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AG +SQ  G   IA T+F STPP+   +L + F
Sbjct:   22 AYDPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAF 206          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.081e-39
Identity = 91/182 (50.00%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPVATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTK 717
            A D + LQD CVADL S + VNG  CK   +  D   FS K+A     N N  GS VT  +V   PG+NTLGVS+ R+D+APGG NPPH HPRATE+  VL G+L VG      T N   SK ++ GE FV PRGL+HFQ N G   A+++  FNSQ  G   + LTLF S PP+   VL K
Sbjct:   26 ATDADPLQDFCVADLNSEVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVK 207          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.718e-39
Identity = 86/187 (45.99%), Postives = 117/187 (62.57%), Query Frame = 1
Query:  181 NTAAADPEMLQDVCVADLTSPIKVN----GFPCKANFSEM--DFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            +T AADPE +QD CVA   +  + +    GFPCK   + +  DFF   LA   +T+N FG+++   NV+  P LNTLGV++ R+D APGG+NP H+HPRA E+V V+ G++ VGF +TA    SK + +GE F  PRGL+HFQ N GN  A  +  FNSQL G    A  LF + P + + VL K+F
Sbjct:   31 STCAADPEPIQDFCVAVPRAGGEASPAYPGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSF 217          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.718e-39
Identity = 91/182 (50.00%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPVATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTK 717
            A D + LQD CVADL S + VNG  CK   +  D   FS K+A     N N  GS VT  +V   PG+NTLGVS+ R+D+APGG NPPH HPRATE+  VL G+L VG      T N   SK ++ GE FV PRGL+HFQ N G   A+++  FNSQ  G   + LTLF S PP+   VL K
Sbjct:   28 ATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVK 209          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.550e-39
Identity = 91/182 (50.00%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPVATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTK 717
            A D + LQD CVADL S + VNG  CK   +  D   FS K+A     N N  GS VT  +V   PG+NTLGVS+ R+D+APGG NPPH HPRATE+  VL G+L VG   T    N   SK ++ GE FV PRGL+HFQ N G   A+++  FNSQ  G   + LTLF S PP+   VL K
Sbjct:   28 ATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVK 209          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.550e-39
Identity = 91/184 (49.46%), Postives = 111/184 (60.33%), Query Frame = 1
Query:  190 AADPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVA D    + VNG  CK        DFF   L  P  TNN  GS VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPR +EI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G +PA   AG +SQ  G   IA T+F S PP+   +L + F
Sbjct:   22 AYDPSPLQDFCVAIDDLKGVFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAF 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39
Identity = 91/184 (49.46%), Postives = 111/184 (60.33%), Query Frame = 1
Query:  190 AADPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVA D    + VNG  CK        DFF   L  P  TNN  GS VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPR +EI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G +PA   AG +SQ  G   IA T+F S PP+   +L + F
Sbjct:   22 AYDPSPLQDFCVAIDDLKGVFVNGRFCKDPKRVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAF 205          
The following BLAST results are available for this feature:
BLAST of FC875492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL114_ARATH9.342e-4050.81Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL117_ARATH1.594e-3950.81Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL115_ARATH1.594e-3950.81Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL113_ARATH1.594e-3950.27Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL35_ORYSJ2.081e-3950.00Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL37_ORYSJ2.718e-3945.99Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL36_ORYSJ2.718e-3950.00Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ3.550e-3950.00Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL118_ARATH3.550e-3949.46Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL120_ARATH4.637e-3949.46Germin-like protein subfamily 1 member 20 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC31404E08EF CTVClemen1 Citrus clementina cDNA clone C31404E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875492 ID=FC875492; Name=FC875492; organism=Citrus clementina; type=EST; length=733bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGTAGCCACAAACAACACGTTTGGTTCAACAGT
GACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGGG
GACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGG
AATATGTATTGACTAAGACTTTCCCAGATGGTA
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