FC875492

Overview
NameFC875492
Unique NameFC875492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875492_ssr25 microsatellite FC875492_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr124 microsatellite FC875492_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr185 microsatellite FC875492_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39
Identity = 91/184 (49.46%), Postives = 111/184 (60.33%), Query Frame = 1
Query:  190 AADPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVA D    + VNG  CK        DFF   L  P  TNN  GS VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPR +EI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G +PA   AG +SQ  G   IA T+F S PP+   +L + F
Sbjct:   22 AYDPSPLQDFCVAIDDLKGVFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAF 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: OXO1_HORVU (Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.056e-39
Identity = 90/181 (49.72%), Postives = 110/181 (60.77%), Query Frame = 1
Query:  193 ADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTK 717
            +DP+ LQD CVADL    + VNG  CK      D   FS KL K   T+   GS VT  +V   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE FV PRGL+HFQ N G   A ++  FNSQ  G   + LTLF S PP+   VLTK
Sbjct:    1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.056e-39
Identity = 90/182 (49.45%), Postives = 112/182 (61.54%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTK 717
            +++P  LQD CVADL    + VNG  CK      D   FS KLAK   T+   GS VT  NV   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE F+ PRGL+HFQ N G   AS++  FNSQ      + LTLF S PP+ + VLTK
Sbjct:   23 SSNPHPLQDFCVADLDGKAVSVNGHMCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTDLNVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGSNPPIPKPVLTK 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.909e-39
Identity = 94/186 (50.54%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP--IKVNGFPCKAN---FSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD CV   T    + VNG  CK     F++ DFF   L +P  TNN  GS VT  NV  + GLNTLG+SL RIDYAP G NPPHTHPRATEI+ V +G L VGF ++    N L +K++  G+ FVFP GL+HFQ N G  PA  IA  +SQ  G   IA T+F S P V   VL + F
Sbjct:   24 ASDPSPLQDFCVGVNTPADGVFVNGKFCKDPRIVFAD-DFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAF 208          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.909e-39
Identity = 93/185 (50.27%), Postives = 112/185 (60.54%), Query Frame = 1
Query:  190 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVA  D  + + VNG  CK        DFFS  L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AG +SQ  G   IA  +F STPP+   +L + F
Sbjct:   21 AYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPINPDILAQAF 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.744e-38
Identity = 95/182 (52.20%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            DP  LQD CVA D  S + VNG  CK        DFF+  L     T N  GS VT  NV  IPGLNTLGVSL RID+APGG NPPHTHPRATEI+ V+EG L VGF T+    N L SK +  G+ FVFP G++HFQ N G   A   AG  SQ  GT  IA  +F S P +   +L K F
Sbjct:   26 DPSPLQDFCVAVDDASGVFVNGKFCKDPKYVKAEDFFTSGLNIAGNTINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAF 207          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.668e-37
Identity = 92/185 (49.73%), Postives = 111/185 (60.00%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLT--SPIKVNGFPCKAN--FSEMDFFSDKLAKPVATNNT-FGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD C+   T  + + VNG  CK     +  DF+   L K   T ++  GS VT  NV  IPGLNTLG+SL RIDY   G NPPHTHPRATEI+ V EG L VGFF++   N L +K++ KG+ FVFP GL+HFQ N G  PA   A  +SQ  G   I  TLF S PP+   VL K F
Sbjct:   24 ASDPSPLQDFCIGVNTPANALFVNGKFCKDPKLVTADDFYFSGLDKARTTESSPVGSNVTTVNVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFPENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPIDPNVLAKAF 208          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.154e-36
Identity = 90/184 (48.91%), Postives = 109/184 (59.24%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP--IKVNGFPCKAN--FSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD CV+  TS   + VNG  CK     +  DFF   L       +  GSTVTA NV  + GLNTLG+SL RIDYA  G NPPHTHPRATEI+ V +G L VGF T+   N L SK + +G+ FVFP GL+HFQ N G  PA   A  +SQ  G   IA T+F + P +   +L K F
Sbjct:   24 ASDPSQLQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNPDNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVFGANPAINPTILAKAF 207          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.823e-35
Identity = 90/182 (49.45%), Postives = 109/182 (59.89%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            DP  LQD CVA   T+ + VNG  CK   + +  DF    L     T N  GS VT  +V  IPGLNTLGVSLAR+D+A GG NPPH HPRATEI+ V +G+L VGF ++    N L  K +K+G+ FVFP GL+HFQ N     A   AGF SQ  GT  IA  +F S P + + VL K F
Sbjct:   27 DPNPLQDFCVAASETNRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSIPQEVLAKAF 208          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.110e-35
Identity = 88/184 (47.83%), Postives = 108/184 (58.70%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP--IKVNGFPCKAN--FSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD CV   T    + VNG  CK     +  DFF   L +    N   GS VTA NV  +PGLNTLG+SL RIDY   G NPPHTHPRA+E+++V  G L VGF T+   N L SK++ +G+ FVFP+GL+HFQ N G  PA   AG +SQ  G   IA T+F S P +    L   F
Sbjct:   22 ASDPSSLQDFCVGVNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVNNLPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSNPQIDPSFLASAF 205          
The following BLAST results are available for this feature:
BLAST of FC875492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL116_ARATH4.637e-3949.46Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
OXO1_HORVU6.056e-3949.72Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1[more]
GER3_WHEAT6.056e-3949.45Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GL18_ARATH7.909e-3950.54Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL119_ARATH7.909e-3950.27Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL17_ARATH8.744e-3852.20Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GL112_ARATH5.668e-3749.73Putative germin-like protein subfamily 1 member 12... [more]
GL111_ARATH2.154e-3648.91Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
GL16_ARATH1.823e-3549.45Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL19_ARATH3.110e-3547.83Putative germin-like protein subfamily 1 member 9 ... [more]

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Properties
Property NameValue
Genbank descriptionC31404E08EF CTVClemen1 Citrus clementina cDNA clone C31404E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875492 ID=FC875492; Name=FC875492; organism=Citrus clementina; type=EST; length=733bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGTAGCCACAAACAACACGTTTGGTTCAACAGT
GACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGGG
GACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGG
AATATGTATTGACTAAGACTTTCCCAGATGGTA
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