FC875492

Overview
NameFC875492
Unique NameFC875492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875492_ssr25 microsatellite FC875492_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr124 microsatellite FC875492_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr185 microsatellite FC875492_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.110e-35
Identity = 89/186 (47.85%), Postives = 109/186 (58.60%), Query Frame = 1
Query:  184 TAAADPEMLQDVCVADLTSP--IKVNGFPCKAN--FSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            T A+DP  LQD CV+  +S   + VNG  CK     +  DFF   L       +  GSTVTA NV  + GLNTLG+SL RIDYA  G NPPHTHPRATEI+ V  G L VGF T+   N L +K + +G+ FVFP GL+HFQ N G  PA   A  +SQ  G   IA T+F + P +   +L K F
Sbjct:   22 TIASDPSQLQDFCVSANSSANGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIAPTVFGANPAINPNILAKAF 207          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.000e-33
Identity = 81/173 (46.82%), Postives = 101/173 (58.38%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSP---IKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLF 678
            A DP  LQD CV  +  P   + VNG  CK     +  DF    L  P  T+N  G   T      +PGLNTLG+S+AR+D+AP G+NPPHTHPRATE+  VLEG   VGF T+      N L +K + KG+ FVFP+GL+HFQ N GN P   I+G +SQ  G   IA  +F
Sbjct:   22 ATDPTQLQDFCVG-VNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVF 193          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.218e-32
Identity = 81/178 (45.51%), Postives = 107/178 (60.11%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVT-----AANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPV 696
            A DP  LQD CVAD TS ++VNG PCK  A  +  DFF   + +P A     G+T +      A    IPGLNTLG S AR+D APGG+ PPH HPRA+E   VL G +  GF T+   + +V+K +++G+ F  P+GLVHF  NNG+ PA++ A  +SQ  G   +A  L A+  PV
Sbjct:   28 AFDPNPLQDFCVADPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGR-GATASRRYGFTARSVDIPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAAPLPV 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.086e-31
Identity = 81/182 (44.51%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCKAN--FSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            DP  LQD CVA + T+ + VNG  CK     +  DFF   L  P  T+N  G++VT  +V+ IPGLNTLG+++AR+D+APGG  PPH HPRA++I+ VL+GQL VGF ++ +    L SK +  G+ F FP GLV F  N G   A  I    SQ  G   I   +F S P +   +L K F
Sbjct:   26 DPNPLQDYCVATNGTNRVFVNGKFCKDPKLVTANDFFYSGLNIPGNTSNRLGASVTDVDVRRIPGLNTLGIAIARLDFAPGGQLPPHIHPRASQIILVLKGQLSVGFVSSNDYNYTLFSKILYPGDVFAFPIGLVQFHANTGKTHAVAIGVVGSQDPGVIPIGDAVFGSNPLIDPKLLAKAF 207          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.647e-31
Identity = 70/171 (40.94%), Postives = 93/171 (54.39%), Query Frame = 1
Query:  211 QDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            QD CVADL +    +G+PCK+  +  DFF   L  P+ T+N  G     AN+ T PGLNTLG+S+  +  APGG N PH+HP  TE   V+EG + VGF TT   L SK I  G+ FV P GL+H++ N G     ++      L     +  TL A+ P +   VL   F
Sbjct:   41 QDFCVADLQATPTNSGYPCKSQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTNYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAF 211          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.035e-30
Identity = 79/182 (43.41%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCKAN--FSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            +P  LQD CVA + T+ + VNG  CK     +  DF++  L  P  T+   G  +T  +V+ +PGLNTLGV +ARID+APGG+ PPHTHPR +EI  V++G+L VGF ++      L +K +  G+ FVFP+GL+ F  N G   A VIA   SQ  G   I   +F S P +   VL K F
Sbjct:   26 EPSPLQDYCVATNETNGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKVLAKAF 207          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.306e-30
Identity = 74/176 (42.05%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPC--KANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTFPD 729
            +QD CVA+L       G+PC    +    DF    L  P  T N   + VT A     PGLN LG+S AR+D AP G+ P HTHP A+E++FVL G +  GF ++AN +  +++K G+  VFP+GL+HFQ N G   AS +  FNS   G Q +   LFA++ P  E V+  TF D
Sbjct:   19 VQDFCVANLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSSANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLP-TELVVGTTFLD 193          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.306e-30
Identity = 82/182 (45.05%), Postives = 104/182 (57.14%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCKAN--FSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            DP  LQD CVA    + + VNG  CK     +  DFF+  L  P  TN   GS V  AN   IPGLNTLGV +ARID+APGG+ PPH HPRA+EI+ V++G+L VGF ++ +    L SK +  G+ FV P GLV F  N G   A  I    SQ  G  ++   +F S PP+   +L K F
Sbjct:   26 DPSPLQDYCVAVPEKNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGSFVNPAN---IPGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGSKPPIDPKILAKAF 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.012e-30
Identity = 78/182 (42.86%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  196 DPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            DP  LQD CVA + T+ + VNG  CK     +  DF++  L  P  T    G+  T  +V+ +PGLNTLGV +AR D+APGG++PPHTHPR ++I  V++G+L VGF ++      L +K +  G+ FVFP+GL+HF  N G   A VI+   SQ  G   I   +F S P +   VL K F
Sbjct:   26 DPSPLQDYCVATNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAF 207          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.495e-29
Identity = 72/174 (41.38%), Postives = 100/174 (57.47%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPCKA--NFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            +QD CVAD   P   +G+ CK     +E DF    L K   T+N   + VT A      GLN L VSLAR+D A GG+ P HTHP A+E++ V++G +  GF ++AN +  K++ +G++ VFP+GL+HFQ N+G  PA     F S   G Q +   LFA+  P +E V   TF
Sbjct:   22 VQDFCVADPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLP-SELVEATTF 194          
The following BLAST results are available for this feature:
BLAST of FC875492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL110_ARATH3.110e-3547.85Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GLP1_MESCR1.000e-3346.82Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL51_ORYSJ3.218e-3245.51Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL12_ARATH2.086e-3144.51Putative germin-like protein subfamily 1 member 2 ... [more]
GLT3_ARATH4.647e-3140.94Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL15_ARATH1.035e-3043.41Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL31_ARATH2.306e-3042.05Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
GL13_ARATH2.306e-3045.05Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL14_ARATH3.012e-3042.86Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GLP1_SINAL1.495e-2941.38Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC31404E08EF CTVClemen1 Citrus clementina cDNA clone C31404E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875492 ID=FC875492; Name=FC875492; organism=Citrus clementina; type=EST; length=733bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGTAGCCACAAACAACACGTTTGGTTCAACAGT
GACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGGG
GACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGG
AATATGTATTGACTAAGACTTTCCCAGATGGTA
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