FC875492

Overview
NameFC875492
Unique NameFC875492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.495e-29
Identity = 77/188 (40.96%), Postives = 107/188 (56.91%), Query Frame = 1
Query:  184 TAAADPEMLQDVCVAD-LTSPIKVNGF----PCKANFSEM---DFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            T A+DP+ +QD C+   +TSP   + F    PCK N SE+   DF    L K        G        +  PGLNTLG+S  R D  PG INPPH HPRATE+  +++G++  GF  + N + +K +++GE  V+P+GLVHFQ N G+V A+++ G NSQ  G Q I   +F S   + E +L K F
Sbjct:   22 TLASDPDPIQDFCIPKPVTSPYHDHHFSTNLPCK-NSSEVTTEDFVFSGL-KTAGNFTETGFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDSNNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGS--GINEELLMKAF 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.350e-29
Identity = 71/174 (40.80%), Postives = 100/174 (57.47%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPCKA--NFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            +QD CVAD   P   +G+ CK     +E DF    L     T+N   + VT A      G+N LGVSLAR+D A GG+ P HTHP A+E++ V++G +  GF ++AN +  K++ +G++ VFP+GL+HFQ N+G  PA     F S   G Q +   LFA+  P +E V   TF
Sbjct:   22 VQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLP-SELVEATTF 194          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.420e-29
Identity = 72/176 (40.91%), Postives = 98/176 (55.68%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTFPD 729
            +QD CVADL +P    GF CK  A+    DF    L     T+N   + VT A V   PG+N LG+S+AR+D A GG+ P HTHP A+E++ V +G +  GF  + N    ++++KG+  VFP+GL+HFQ N G  PA   A F S   G Q +   LF +  P  E +   TF D
Sbjct:   25 VQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKNDLP-TEVIAQTTFLD 199          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.690e-29
Identity = 72/184 (39.13%), Postives = 107/184 (58.15%), Query Frame = 1
Query:  193 ADPEMLQDVCVADLTSP---IKVNGFPCK--ANFSEMDFFSDKLAKPVATNNT-FGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASV-IAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            +DP+ LQD CV+   S    I +NG  CK     S  DF +  L++P  T    F   VT      +PGLNT+G+++AR+D+   G+ PPH HPRA+E+   L+G L VGF  T+  + ++ +  GE FVFP+GL+HF  N   V +++ ++G +SQ  GTQ ++L+ F S PP    VL   +
Sbjct:   18 SDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAY 201          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.266e-28
Identity = 67/167 (40.12%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAST 687
            A   + +QD CVA+L       G+PC +    +   F   L  P  T N   + VT   V   P LN LG+S AR+D AP G+ P HTHP A+E++FVL+G +  GF ++AN +  +++K G+  VFP+GL+HFQ N G  PA+ +  F+S   G Q +   LFA+T
Sbjct:   13 ALSNDSVQDFCVANLKRAETPAGYPCIRPIHVKASDFVFSLGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISSANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANT 179          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.266e-28
Identity = 71/176 (40.34%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTFPD 729
            +QD CVAD  +P    G+ CK  A  +  DF    L     T N   + VT A     PG+N LG+SLAR+D  PGG+ P HTHP A+E++ V++G +  GF  + N    K++KKG+  VFP+GL+HFQ N G  PA     F+S   G Q +   LF +  P  E +   TF D
Sbjct:   20 VQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKNDLP-TELIAQTTFLD 194          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28
Identity = 67/159 (42.14%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLF 678
            +QD CVAD  +P    G+ CK  A  +  DF    L     T N F + VT A     PG+N LG+SLAR+D  PGG+ P HTHP A+E++ V++G +  GF  + N    K++KKG+  VFP+GL+HFQ N G+ PA     F+S   G Q +   LF
Sbjct:   20 VQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALF 178          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 68/166 (40.96%), Postives = 96/166 (57.83%), Query Frame = 1
Query:  205 MLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFT-TANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVA 699
            + QD CVADLT      G+PCKA+    DF    LA    T+N   + VT A V   PG+N LG+S AR+D A GG+ P HTHP A+E++FV +G +  GF T ++N + ++++  G+  VFP+GL+H+Q N G   A  +  F+    G Q     LFA+  P A
Sbjct:   24 LTQDFCVADLTCSDTPAGYPCKASVGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANNLPSA 189          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 69/177 (38.98%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  205 MLQDVCVADLTSPIKV-NGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA-NVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            + QD CVA+L       +G+ C+  A  +  DF+S  LA+P      F +++ +A VQ  P +N LG+S +R+D  PGG+ P HTHP  +E+++VL+G L  GF +++ N +  K + KG  FVFP+GL+HFQ N G+  A   A ++S   G Q +   LFA+  P + YV+  TF
Sbjct:   27 LTQDFCVANLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFANNLPTS-YVVKGTF 202          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 73/187 (39.04%), Postives = 106/187 (56.68%), Query Frame = 1
Query:  196 DPEMLQDVCVADLTSP-----IKVNGFPC-KANFSEMDFFS----DKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            DP++L D CVAD  +        +NG  C     +  D F+     +   P AT   F +T+T+    ++PG N  G+++ARID APGG+ PPH+HPRA+E   VL G + VGF  T+  L ++ ++ GE FVFPR +VHF  N +   PA V++G NSQ  G Q +  + F + P + + VL K F
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAF 208          
The following BLAST results are available for this feature:
BLAST of FC875492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL32_ARATH1.495e-2940.96Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GL33_ARATH4.350e-2940.80Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
ABP20_PRUPE7.420e-2940.91Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL11_ARATH9.690e-2939.13Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GLP1_BRANA1.266e-2840.12Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
AB19A_PRUPE1.266e-2840.34Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
AB19B_PRUPE2.819e-2842.14Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL814_ORYSJ3.682e-2840.96Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL813_ORYSJ3.682e-2838.98Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL31_ORYSJ3.682e-2839.04Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC31404E08EF CTVClemen1 Citrus clementina cDNA clone C31404E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875492 ID=FC875492; Name=FC875492; organism=Citrus clementina; type=EST; length=733bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGTAGCCACAAACAACACGTTTGGTTCAACAGT
GACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGGG
GACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGG
AATATGTATTGACTAAGACTTTCCCAGATGGTA
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