FC875492

Overview
NameFC875492
Unique NameFC875492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875492_ssr25 microsatellite FC875492_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr124 microsatellite FC875492_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr185 microsatellite FC875492_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.547e-26
Identity = 78/188 (41.49%), Postives = 106/188 (56.38%), Query Frame = 1
Query:  187 AAADPEMLQDVCVADLTS--PIKVN---GFPCK--ANFSEMDF-FSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDY-APGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A  DP+ +QD CV D     P+++     +PC+  AN +  DF FS   A    +  T  + V+    Q  PGL+TLG+S AR D  A GG+NPPH HPRATE   VL G++  GF  +   L +K +++GE  VFPR +VHFQ N G+ PA+V   FNS+  G   I  T+F S   + E VL + F
Sbjct:   21 ARGDPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQ-FPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDSGGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGS--GIREAVLERAF 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 66/179 (36.87%), Postives = 102/179 (56.98%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNG-FPCKANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP++L D  +    +P+ + G F     F ++ F +    +P    N+F  TVT A +   P LN   VS A + + P  +NPPHTHPR+ E++ V++G L VGF  T N L ++ +  G+ FVFP+G+VHFQ N+GN PA  ++ F S   G   + +T+F +   + + VL K+F
Sbjct:   25 AGDPDILTDYVIPANGNPMNITGDFFTFTGFRKV-FNTSSAPEP----NSF--TVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGT--GIDDAVLAKSF 194          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.500e-25
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  184 TAAADPEMLQDVC--VADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNI 663
            + + D + +QD C       S   +NG+PCK     +  DF S KL +   T+N   S VT       PGLNTLG+S++R D    G  P H+HPR++E++FV++G +  GF  T N +    ++KG+ FVFP+GL+HF  + G  PA+  + +NSQ  G  NI
Sbjct:   15 SVSGDSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNI 178          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.109e-24
Identity = 64/184 (34.78%), Postives = 100/184 (54.35%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFS-DKLAKPVATNNTF-----GSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP++L D  +   ++   + G          DFF+      P++ N +        TVT A +   P LN   VS A + Y P  +NPPHTHPR+ E++ +++G L VGF  T N L ++ +  G+ FVFP+G+VHFQ N+GN PA  ++ F S   G  ++ +T+F +   + + VL K+F
Sbjct:   23 AGDPDILTDYVIPAGSNAENITG----------DFFTFTGFRNPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSF 194          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 70/179 (39.11%), Postives = 95/179 (53.07%), Query Frame = 1
Query:  193 ADPEMLQDVCVADLTSPIKV--NGFPCKANFSEM--DFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTK 717
            +D   LQDVC        K+  NGF CK+  + M  DF +  L      +N   S+         PGLNTLG+S+AR D A  G   PH+HPRA+E++FV  G +  GFF T   L  K++ +G+ F+FPRGLVHF  N G   A+  +  NSQ  G   I   +FA    VAE ++ +
Sbjct:   23 SDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEVAEGLMAR 201          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.437e-21
Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = 1
Query:  208 LQDVCVADLTSPIKV-NGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNV 609
            + D CVA+        +GF CK  A  +  DF    LAKP  T N   + VT A V   PG+  LGV+LAR+D APGG+ P HTHP A+EI+ V+EG +   F ++ N +  K++  G+  VFP+GL+ FQ+  G +
Sbjct:   24 VNDFCVANGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISSGNKVYEKALYPGDVMVFPQGLLDFQEITGKI 160          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 60/171 (35.09%), Postives = 89/171 (52.05%), Query Frame = 1
Query:  181 NTAAADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA--NVLVSKSIKKGENFVFPRGLVHFQKNNG-NVPASVIAGFNSQLQGTQNIALTLFAS 684
            +  AADP++L D  V   T P  ++G           FF+ K      + +    TVT A     P L    VS A + +  G +NPPH HPRA+E++ V++G L VG    A    + +++++ G+ FVFP+G+VHFQ NNG +V A   + F S   GT ++   LF S
Sbjct:   22 SAGAADPDILTDFVVPSDTDPSGIDGA----------FFTYKNLVTGNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGS 182          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  184 TAAADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMDFFSDKLAKPVATNNTFGSTVTAA--NVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANV-LVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLF 678
            ++AA PE++  +    L +P +++     K N    DF + KL     T  T G TV  +  N   + G N + +++  I+    GIN PHTHPRATEI F+  G+ + GFF       +  +++ G   VFP+G +HF+ N    PA  +A FN++  G Q  A + F
Sbjct:   43 SSAASPELVAQL----LNAPSELDRIKLLKDNQFVFDFKNSKLG---VTQGTGGKTVATSRTNFPAVIGHN-VAMTVGFIEAC--GINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGVQTTASSFF 201          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 48/145 (33.10%), Postives = 69/145 (47.59%), Query Frame = 1
Query:  268 KANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFF-TTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVA 699
            K N    DF + KL     T +  G TV  +     P +    +++        GIN PHTHPRATEI F+ +G+   GFF       +   +++G   VFP+G +HF+ N    PA  +A FN++  G Q  A + F     VA
Sbjct:   55 KDNQFVFDFKNSKLG---VTQSAGGKTVATSRTD-FPAVIGHNIAMTVGFIEACGINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSFFGLPADVA 195          
The following BLAST results are available for this feature:
BLAST of FC875492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL24_ORYSJ1.547e-2641.49Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GL92_ORYSJ1.310e-2536.87Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL34_ARATH6.500e-2538.41Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL93_ORYSJ1.109e-2434.78Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL111_ORYSJ5.502e-2439.11Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI7.437e-2141.61Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL91_ORYSJ4.081e-1935.09Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
SR1A_PHYPO3.952e-1433.14Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]
SR1B_PHYPO2.169e-1233.10Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31404E08EF CTVClemen1 Citrus clementina cDNA clone C31404E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875492 ID=FC875492; Name=FC875492; organism=Citrus clementina; type=EST; length=733bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGTAGCCACAAACAACACGTTTGGTTCAACAGT
GACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGGG
GACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGG
AATATGTATTGACTAAGACTTTCCCAGATGGTA
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