FC875496

Overview
NameFC875496
Unique NameFC875496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:12..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875496 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.902e-50
Identity = 102/195 (52.31%), Postives = 122/195 (62.56%), Query Frame = 3
Query:  111 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVIT 680
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q PKPSCH+VIT
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVIT 240          
BLAST of FC875496 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.303e-49
Identity = 103/204 (50.49%), Postives = 127/204 (62.25%), Query Frame = 3
Query:  111 CGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVIT 680
            CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFPAFG +GN   R RE+AAF  QT HETTGGW  AP G ++WGYCF  E +PPS YC  +  +PC    KYYGRGPIQL++N+NY                    ATD  +SFK+A+WFWMT Q  KPS H+VIT
Sbjct:   63 CGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVIT 260          
BLAST of FC875496 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.359e-49
Identity = 92/178 (51.69%), Postives = 118/178 (66.29%), Query Frame = 3
Query:  156 TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN-LNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVIT 680
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  + +E+AAF AQT HETTGGW  AP G YAWGYCF+SE +    YC+  ++PC    KYYGRGPIQLT NYNY                    +T+P +SFK+AIWFWMT Q  KPS H+VIT
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVIT 250          
BLAST of FC875496 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.796e-48
Identity = 97/177 (54.80%), Postives = 115/177 (64.97%), Query Frame = 3
Query:  162 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVIT 680
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   R RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +PC  GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVIT 251          
BLAST of FC875496 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 189.889 bits (481), Expect = 1.063e-47
Identity = 103/208 (49.52%), Postives = 124/208 (59.62%), Query Frame = 3
Query:  111 CGSGVVCGE----RDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVIT 680
            CGS   CG+    + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    R RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +PC  GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT
Sbjct:   43 CGSTPYCGDGCQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVIT 248          
BLAST of FC875496 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.812e-47
Identity = 94/180 (52.22%), Postives = 113/180 (62.78%), Query Frame = 3
Query:  153 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVIT 680
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   R R++AAF AQT HETTGGW  AP G +AWGYCF  E    + YC  +  +PC    +YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVIT 196          
BLAST of FC875496 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.812e-47
Identity = 94/179 (52.51%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  153 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVI 677
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   + RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +PC    +YYGRGPIQL+ NYNY                    ATD  + FK+AIWFWMTAQPPKPS H VI
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVI 195          
BLAST of FC875496 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.887e-47
Identity = 97/206 (47.09%), Postives = 122/206 (59.22%), Query Frame = 3
Query:  111 CGSGVVCGERDTGH----------GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI--SPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVIT 680
            CGSG  C  + +G           G  G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   R RE+AAF AQT HETTGGW  AP G Y+WGYCF  E   +  S YC  +  +PC    KYYGRGPIQ+++NYNY                    A+D  +SFK+A WFWMT Q PKPSCH V+T
Sbjct:   51 CGSG--CQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMT 252          
BLAST of FC875496 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.464e-46
Identity = 89/174 (51.15%), Postives = 112/174 (64.37%), Query Frame = 3
Query:  171 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVIT 680
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+  E   P  YC  +  +PC    KY+GRGPIQ+++NYNY                    A D V+SFK+A+WFWMTAQ PKPS H+VIT
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY--GAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVIT 176          
BLAST of FC875496 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.299e-45
Identity = 96/196 (48.98%), Postives = 117/196 (59.69%), Query Frame = 3
Query:  111 CGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVIT 680
            C  G  CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+     RE+AAF AQT HETTGGW  AP G Y+WGYCF  E +  +P YC     +PC    KYYGRGPIQ+T+NYNY                    A+D  +SFK+A WFWMT Q PKPSCH VIT
Sbjct:   57 CSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVIT 248          
The following BLAST results are available for this feature:
BLAST of FC875496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI3_SOLTU3.902e-5052.31Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ3.303e-4950.49Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA7.359e-4951.69Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIA_SECCE2.796e-4854.80Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU1.063e-4749.5226 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE1.812e-4752.22Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_HORVU1.812e-4752.5126 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_ORYSJ6.887e-4747.09Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC4.464e-4651.15Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI3_ORYSJ1.299e-4548.98Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC31404E12EF CTVClemen1 Citrus clementina cDNA clone C31404E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875496 ID=FC875496; Name=FC875496; organism=Citrus clementina; type=EST; length=681bp
AAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGCTTATT
GCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTC
TGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCC
ACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTT
GAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTT
CTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTG
GTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTT
GCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGG
AGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCC
CCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGT
CCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCT
AGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATC
CAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCA
CCAAAGCCATCATGCCACGAAGTCATTACCG
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