FC875500

Overview
NameFC875500
Unique NameFC875500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10241 contig Ccv1_Contig10241:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1F4_ARATH (PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 54/144 (37.50%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  227 INHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFR 658
            I+     ++ G A RR W  + D  +   P   S+   RI+ N +YFR NY  V+  VI FSLI +P SL++  GL+  WIFLY  R  D PL VF     +R  L  L V++I +  LT+    +++A+M GA L+  H   R
Sbjct:   22 ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLR--DVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIR 163          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PRA1D_ARATH (PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  272 RPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFR 658
            RPW +  D SAFS P S ++AT R+ +N ++FR+NY  ++++++  +LIT P ++L  + +  +W FLY  R  ++PL +FG T  +     +LI LSI     T V    ++ V  G  ++  H A R
Sbjct:   21 RPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLITRPIAILAFIAVGLAWFFLYFAR--EEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGVWLRALTTVGFGVLVLILHAALR 147          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1G2_ARATH (PRA1 family protein G2 OS=Arabidopsis thaliana GN=PRA1G2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  245 SLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLIT-NPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFR 658
            +L    +  RPW+EL     FS PESFS   LR + N++YF VNY  +V+   AF+LIT +P +L+++  ++A W+  + FR  + PL+++     +R  L  L++ S++  + T+    L   V VG  L   H  FR
Sbjct:   27 NLTTAISSHRPWSELIFSGDFSLPESFSSLLLRSKTNFNYFFVNYTIIVSTCAAFALITASPVALIVVGAIIALWLIFHFFR--EDPLILWSFQVGDRTVLLFLVLASVWAIWFTNSAVNLAVGVSVGLLLCIIHAVFR 163          
BLAST of FC875500 vs. ExPASy Swiss-Prot
Match: PR1G1_ARATH (PRA1 family protein G1 OS=Arabidopsis thaliana GN=PRA1G1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  278 WAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFR 658
            W+E     +  +P SFS A  R++ N  +F VNY+ + A  I   LI +P +L+ +   +A W+ LY +R  D PLV++GR  S+R  +  LI+ S++  +  +    LI  V+    L   H   R
Sbjct:   41 WSEFLAFGSIDRPSSFSPAVSRVKLNLHHFAVNYVLLTAASITLFLIGDPMALVTVASFVAMWLLLYFYR--DHPLVLYGRHISDRVIVFGLILGSLWALWFINSLQCLILGVVTSVLLCLVHAIIR 165          
The following BLAST results are available for this feature:
BLAST of FC875500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PR1F4_ARATH1.128e-1837.50PRA1 family protein F4 OS=Arabidopsis thaliana GN=... [more]
PRA1D_ARATH1.629e-1734.88PRA1 family protein D OS=Arabidopsis thaliana GN=P... [more]
PR1G2_ARATH6.190e-1734.53PRA1 family protein G2 OS=Arabidopsis thaliana GN=... [more]
PR1G1_ARATH3.179e-1332.28PRA1 family protein G1 OS=Arabidopsis thaliana GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404F04EF CTVClemen1 Citrus clementina cDNA clone C31404F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875500 ID=FC875500; Name=FC875500; organism=Citrus clementina; type=EST; length=709bp
GATAATCTATATTCGCTCCTCTTCATCCCACCCTGCCTCAATATCTTTCA
ATTCATTAGCCACCAAAGAACGATAAGAAAAAGGTAACAATAATAAAATT
CCCAAAATGACCTCCGCATCGCCGCCAGTCCTCCCAATCTCCAACTCCCA
ACCGACCACCACGGCGTCCTCCGCTTCCTCGGTCCAATCCCAACCACCAG
TGACGACCCCGGCTTTCCGCGCCCTAATCAACCACATCTCCGACTCACTC
CGTTACGGCTTCGCCCAGCGCCGCCCGTGGGCCGAACTCGCCGACCGATC
CGCCTTCTCCAAACCGGAGTCGTTCTCCGAAGCCACCCTCCGCATCCGCA
AGAACTACTCCTATTTCCGAGTCAATTACCTCACGGTCGTCGCTGTCGTC
ATTGCTTTCTCTCTCATCACCAATCCTTTCTCTCTCCTCATGCTCGTCGG
ACTCCTCGCCTCCTGGATCTTCCTCTACCTCTTCCGCCCCTCCGATCAGC
CGCTCGTTGTATTCGGCCGCACGTTCAGCGAGCGCGAGACGCTTGGTGTC
TTGATCGTTTTGAGCATCTTCGTCTTTTTCCTCACCAGTGTCGGATCGAT
CTTGATCTCGGCTGTGATGGTGGGGGCTGGTCTGATTTGTGCTCACGGTG
CGTTTAGGGTTCCTGAGATCTGTTCTTGGACGAACAGAGCCTTCTGCACA
CGGATCTTG
back to top