FC875505

Overview
NameFC875505
Unique NameFC875505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2412 contig Ccv1_Contig2412:1..381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: NIFU_HAEIN (NifU-like protein OS=Haemophilus influenzae GN=nifU PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 53/77 (68.83%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    4 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            + +G I DA FKT+GCGSAIASSS+ TEWVKGK +EE  +IKN++IA+ L LPPVK+HCS+LAEDAIKAA+ DY+AK
Sbjct:   48 DDNGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAK 124          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: NIFU_ECOLI (NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSK 124          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: NIFU_ECOL6 (NifU-like protein OS=Escherichia coli O6 GN=nifU PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSK 124          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: NIFU_ECO57 (NifU-like protein OS=Escherichia coli O157:H7 GN=nifU PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSK 124          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISU1_TRAHO (Iron sulfur cluster assembly protein 1 OS=Trachipleistophora hominis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.566e-24
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   19 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKH 237
            I DA F+TFGCGSAIASSS+ATEW+KGK + + L I N +IAK LSLPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct:   64 IKDAKFRTFGCGSAIASSSLATEWIKGKSISDSLKITNKDIAKKLSLPPVKLHCSMLAEDAIKAAISDYQKKN 136          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISU1_CANGA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Candida glabrata GN=ISU1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.566e-24
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKHT 240
            ++K+G I D  FKTFGCGSAIASSS  TE V G  +++   IKNT IAK LSLPPVKLHCSMLAEDAIKAA+KDY++K T
Sbjct:  128 NDKTGVIEDVKFKTFGCGSAIASSSYMTELVHGMTLDDAAKIKNTTIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKRT 207          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISU1_YEAST (Iron sulfur cluster assembly protein 1, mitochondrial OS=Saccharomyces cerevisiae GN=ISU1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.671e-24
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            ++ +G I D  FKTFGCGSAIASSS  TE V+G  +++   IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY++K
Sbjct:   80 NDSTGVIEDVKFKTFGCGSAIASSSYMTELVQGMTLDDAAKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSK 157          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISU1_ASHGO (Iron sulfur cluster assembly protein 1, mitochondrial OS=Ashbya gossypii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.557e-24
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            D+ +G I +  FKTFGCGSAIASSS  TE V+GK + +   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY +K
Sbjct:   70 DDSTGVIENVKFKTFGCGSAIASSSYMTELVRGKTLADAEKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYRSK 147          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISU1_ENCCU (Iron sulfur cluster assembly protein 1 OS=Encephalitozoon cuniculi GN=ISU1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.326e-23
Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKH 237
            K   I DA FKTFGCGSAIASSS+ATEW+K K ++E L I N +IAK LSLPP+KLHCSMLAEDAIK A+KD+  K+
Sbjct:   60 KDNVIEDAKFKTFGCGSAIASSSLATEWIKKKTIDESLKISNRDIAKKLSLPPIKLHCSMLAEDAIKMAIKDFLDKN 136          
BLAST of FC875505 vs. ExPASy Swiss-Prot
Match: ISU1_YARLI (Iron sulfur cluster assembly protein 1, mitochondrial OS=Yarrowia lipolytica GN=ISU1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.580e-23
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    4 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            + +G I D  FKTFGCGSAIASSS  TE V+GK + E   IKNT IAK LSLPPVKLHCSMLAEDAIK+A+ DY +K
Sbjct:   82 DDNGVIQDVKFKTFGCGSAIASSSYVTELVRGKSLAEAGKIKNTVIAKELSLPPVKLHCSMLAEDAIKSAISDYNSK 158          
The following BLAST results are available for this feature:
BLAST of FC875505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NIFU_HAEIN1.199e-2468.83NifU-like protein OS=Haemophilus influenzae GN=nif... [more]
NIFU_ECOLI1.199e-2470.27NifU-like protein OS=Escherichia coli (strain K12)... [more]
NIFU_ECOL61.199e-2470.27NifU-like protein OS=Escherichia coli O6 GN=nifU P... [more]
NIFU_ECO571.199e-2470.27NifU-like protein OS=Escherichia coli O157:H7 GN=n... [more]
ISU1_TRAHO1.566e-2472.60Iron sulfur cluster assembly protein 1 OS=Trachipl... [more]
ISU1_CANGA1.566e-2468.75Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_YEAST2.671e-2469.23Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_ASHGO4.557e-2469.23Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_ENCCU1.326e-2368.83Iron sulfur cluster assembly protein 1 OS=Encephal... [more]
ISU1_YARLI6.580e-2368.83Iron sulfur cluster assembly protein 1, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC31404F09EF CTVClemen1 Citrus clementina cDNA clone C31404F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875505 ID=FC875505; Name=FC875505; organism=Citrus clementina; type=EST; length=381bp
GATGAAAAGAGTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTCGGTTG
TGGCTCTGCCATCGCTTCATCATCTGTTGCCACAGAATGGGTGAAAGGGA
AGCAGATGGAGGAAGTTTTGTCCATTAAGAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCGGTTAAGCTGCATTGTAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACATACCAAATCAAGTG
CCGCCTCAGAGGCAGCTCCTGCAGAGAAGGCTGCCGATGCTTGAAGATAT
TGATGAAAACATTTGAAAAATGATGTTAATGTGCTACTTGTGGAAGGTGT
ATCAGGGACACTGCAAATCCTAATATTGATG
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