FC875506

Overview
NameFC875506
Unique NameFC875506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:13..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 67/231 (29.00%), Postives = 107/231 (46.32%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GMTH+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK        +L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHS------------ISSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLVSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVV 218          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 63/214 (29.44%), Postives = 104/214 (48.60%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDI 712
            PR GS+GF PR RAA    +  ++P DD  +P  L  F GYKAGM+H+V   ++P S    +E    VT++ET          Y  TP G R L  VW   + E++ R                   + ++ + +  I+  L+  +   + VRV+ HT    +  + +K+  +ME +V GG+++++VD+A    +   +  V  VF+  E  D+
Sbjct:    7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSL--------------SVPEEQSGDIEGDIRTALD--EGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDV 202          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 66/219 (30.14%), Postives = 106/219 (48.40%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA-QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGK-KSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            +   PR GS+ F PRKR AR   +V  +P+ D +    L AF GYK GMTH+     + GS     E    VTI+E           Y KT  GL++L  V A  +L +E+ R+                  +++  E K + ++ +++ I +    +RVL HT+  K+  + +KK  ++E  + G ++ +K++YA     K+I    VFQ+ E  D I
Sbjct:    3 RHHQPRKGSVAFSPRKRVARETPRVSTWPELDEAG---LLAFAGYKVGMTHVTALDSRKGSPTENMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI--------------SVPKFDDIEAKIEELRNKIDDIDE----IRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAI 199          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 68/233 (29.18%), Postives = 110/233 (47.21%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWA----QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    Q L    R R + ++               + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIRSFSSFL--------------KNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVV 218          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_SULIY (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 66/231 (28.57%), Postives = 109/231 (47.19%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVV 218          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 66/231 (28.57%), Postives = 109/231 (47.19%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVV 218          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 66/231 (28.57%), Postives = 109/231 (47.19%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVV 218          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 66/231 (28.57%), Postives = 109/231 (47.19%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVV 218          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 66/231 (28.57%), Postives = 109/231 (47.19%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVV 218          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 66/222 (29.73%), Postives = 102/222 (45.95%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYAS-----VVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            K   PR GSL + PRKRA     +++ +PKD      R+  F GYKAGMTHI+   ++PG     KE    VT++E           Y +   GL +   VW   L++ V+RR                      D  +++ QA+L +++   +      VR+L HTQ   +K   +KK  +ME  + G  +  K DYA     K++    V  + E++D+I
Sbjct:    3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKD---SEVRMLGFAGYKAGMTHILMIDDRPG-LTKGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRI----------------KTLPKDYNEEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVI 202          
The following BLAST results are available for this feature:
BLAST of FC875506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL3_SULSO2.523e-1829.0050S ribosomal protein L3P OS=Sulfolobus solfataric... [more]
RL3_NATPD2.523e-1829.4450S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_METST2.523e-1830.1450S ribosomal protein L3P OS=Methanosphaera stadtm... [more]
RL3_SULIA5.621e-1829.1850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIY7.341e-1828.5750S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIN7.341e-1828.5750S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIM7.341e-1828.5750S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIL7.341e-1828.5750S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIK7.341e-1828.5750S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_THEON9.587e-1829.7350S ribosomal protein L3P OS=Thermococcus onnurine... [more]

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Properties
Property NameValue
Genbank descriptionC31404F10EF CTVClemen1 Citrus clementina cDNA clone C31404F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875506 ID=FC875506; Name=FC875506; organism=Citrus clementina; type=EST; length=715bp
GCCAGCTCTAGAGCACAACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGA
GAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTT
CTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCC
CAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACA
AGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAG
CTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCC
AATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTC
GCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGA
AGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATA
CTCAAAGCAGTATGAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGC
TGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACT
CAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGA
AATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATG
GCTTCTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAAGATGAG
ATGATTGACATCATC
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