FC875506
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_STAMF (50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17 Identity = 72/265 (27.17%), Postives = 122/265 (46.04%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFP------------------KDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP-RGLRSLNTVWAQHL--------------------SEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIK-KYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715 M HRK+ PRHGSLG PRKRAA+ +++++P K KP L ++ YKAGM+H + ++P + KE VT+++ Y P GL S VW + ++++ R++ K + ++ G K ++ +LE++K + +RV+A T I + G+ +KK ++EI++ GGT++E++DYA + VD VF++ + IDII Sbjct: 1 MGHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVWRSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKG---LRKVNPGLVKPEPHSEYGFKFLENNWKEKLERLKAAELADIRVIAST-IPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDII 260
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17 Identity = 66/220 (30.00%), Postives = 107/220 (48.64%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP--RGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715 K PR GS+ + PRKRA+ +++ +P D KP L F+GYKAGM H+ ++ S KE +AVT++ET Y P L S+ W ++ EVR+ + +++TD+ +Q L+ + S ++V+A TQ K G+ +K ++EI V G TI E+ YA G K++ VF+ +++D+I Sbjct: 4 KIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPT-LLGFVGYKAGMVHVTVVDDRKTSPFFGKELVKAVTVVETPPLYVVGLRAYAINPLKAELVSVGEAWV-NIPNEVRKYIARR--------IPTLPEKFDTDKALADLQGLLDSV----SYIKVIAMTQPYK-AGVGKKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTDVFKPGQLVDVI 208
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17 Identity = 71/222 (31.98%), Postives = 101/222 (45.50%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715 K PR GSL + PRKRA +++++PKD R+ F GYKAGMTHI+ + PG KE VTI+E Y + GL + VW L + V RR KN+ +E ++ QLE + + VR+L HTQ + GLK KK +ME + G + K DYA K++ V + E++D+I Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARRIKTLPKNY----------------NEEAFQAKLGQLEDLVNDGEIADVRLLVHTQ-PWLIGLK-KKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVI 202
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3) HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17 Identity = 60/195 (30.77%), Postives = 87/195 (44.62%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 661 PR GS+GF PRKRA + ++P DD L F GYKAGMTH+V +K + ET VT++ET Y TP G + L VWA E + R DEG + + + + +RV+ HT G+ +K +ME +V GGT+A+++++A E Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIE 181
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17 Identity = 60/195 (30.77%), Postives = 87/195 (44.62%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 661 PR GS+GF PRKRA + ++P DD L F GYKAGMTH+V +K + ET VT++ET Y TP G + L VWA E + R DEG + + + + +RV+ HT G+ +K +ME +V GGT+A+++++A E Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIE 181
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17 Identity = 66/223 (29.60%), Postives = 103/223 (46.19%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715 K PR GS+G PRKRAA +V+ +P+ + KP L F YKAGM H V ++P S L+ KE +AVT+++ Y P RS+ VWA L +RR T K + Q++K++++ V VR L TQ + G+ +K L+EI + G ++ E++ +A K + VF +++D+I Sbjct: 8 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL--------------------TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVI 208
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17 Identity = 62/218 (28.44%), Postives = 100/218 (45.87%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTH-IVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715 + PR GS+ F PRKRAA+ ++K++P++D K L GYK GMTH +V D +K S + + VT++E Y KT RGL+ + V A +L EE+ R+ +Y E IQ L+K + ++VL HT K+ + +KK + E + G EK++ A ++ + + + +D I Sbjct: 3 RHHQPRKGSVAFSPRKRAAKETPRIKSWPQNDEPK---LLGLAGYKVGMTHALVTDSDK-NSPTNGMDVFTPVTVLEVPPVVVMGIRAYEKTSRGLKVITEVLADNLDEELSRKI-------------SLPKEYNKSEAIAKIQGVLDKTED----IKVLVHTN-PKVTSVPKKKPDIFECGIGGANPEEKLNTALELLGNEVKASDILNEGQFVDAI 198
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17 Identity = 62/223 (27.80%), Postives = 102/223 (45.74%), Query Frame = 2 Query: 50 RMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDI 712 R R PR GSL F PRKRA+R +++++P ++ R+ F GYKAGMTH + + P S +E VTI++ Y TP G R + WA+ E R + +G+ ++E++ V +RV+ TQ +K G+ +KK +ME ++ G + E+ +YA ++I VF + E++D+ Sbjct: 3 RGGRRNPGRPRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVFT-----------------VPKDGEAGDLDKIEELVDEGIVEEIRVIVATQPKK-AGVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDV 204
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17 Identity = 62/217 (28.57%), Postives = 99/217 (45.62%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715 K PR GSL F PRKRA R K++++P+ + K L AF YKAG TH + P S ++ VT++E Y K +GL++L VWA +E+ R+ + K+ +L+++ VR + HT K L +KK ++EI++ G I++ + YA K++ ++ VF E ID + Sbjct: 4 KRNRPRRGSLAFSPRKRAKRPVPKIRSWPERETVK---LLAFPVYKAGTTHALYKENNPKSPNADQDVFTPVTVMEAPDITIAGIRAYGKDTKGLKALTEVWADSFDKELGRKI-------------------NLPKEPKANTEKLDEVADKIVEVRAIVHTN-PKDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTV 197
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5) HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17 Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDI 712 PR GSLGF PRKR+ + ++P DD + F GYKAGMTH+V ++P S E VT+IET Y TP G R L VW E+ R D + + Q+ + + +R++ HT + + +KK +ME +V GG++++++D+A E + ++ +F+ E D+ Sbjct: 7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-----------------DVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADV 203 The following BLAST results are available for this feature:
BLAST of FC875506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875506 ID=FC875506; Name=FC875506; organism=Citrus clementina; type=EST; length=715bpback to top |