FC875506

Overview
NameFC875506
Unique NameFC875506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:13..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_STAMF (50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 72/265 (27.17%), Postives = 122/265 (46.04%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFP------------------KDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP-RGLRSLNTVWAQHL--------------------SEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIK-KYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            M HRK+  PRHGSLG  PRKRAA+   +++++P                  K    KP  L  ++ YKAGM+H +   ++P +    KE    VT+++           Y   P  GL S   VW   +                    ++++ R++ K               +  ++ G K ++     +LE++K    + +RV+A T I  + G+ +KK  ++EI++ GGT++E++DYA       + VD VF++ + IDII
Sbjct:    1 MGHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVWRSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKG---LRKVNPGLVKPEPHSEYGFKFLENNWKEKLERLKAAELADIRVIAST-IPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDII 260          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 66/220 (30.00%), Postives = 107/220 (48.64%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP--RGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            K   PR GS+ + PRKRA+    +++ +P  D  KP  L  F+GYKAGM H+    ++  S    KE  +AVT++ET          Y   P    L S+   W  ++  EVR+   +               +++TD+    +Q  L+ +    S ++V+A TQ  K  G+ +K   ++EI V G  TI E+  YA G   K++    VF+  +++D+I
Sbjct:    4 KIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPT-LLGFVGYKAGMVHVTVVDDRKTSPFFGKELVKAVTVVETPPLYVVGLRAYAINPLKAELVSVGEAWV-NIPNEVRKYIARR--------IPTLPEKFDTDKALADLQGLLDSV----SYIKVIAMTQPYK-AGVGKKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTDVFKPGQLVDVI 208          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 71/222 (31.98%), Postives = 101/222 (45.50%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            K   PR GSL + PRKRA     +++++PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E           Y +   GL +   VW   L + V RR     KN+                 +E  ++   QLE +     +  VR+L HTQ   + GLK KK  +ME  + G  +  K DYA     K++    V  + E++D+I
Sbjct:    3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARRIKTLPKNY----------------NEEAFQAKLGQLEDLVNDGEIADVRLLVHTQ-PWLIGLK-KKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVI 202          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 60/195 (30.77%), Postives = 87/195 (44.62%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 661
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ET          Y  TP G + L  VWA    E + R                       DEG  + +       +  + +RV+ HT      G+ +K   +ME +V GGT+A+++++A    E
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIE 181          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 60/195 (30.77%), Postives = 87/195 (44.62%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 661
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ET          Y  TP G + L  VWA    E + R                       DEG  + +       +  + +RV+ HT      G+ +K   +ME +V GGT+A+++++A    E
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIE 181          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 66/223 (29.60%), Postives = 103/223 (46.19%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P     RS+  VWA  L   +RR                      T   K  +  Q++K++++  V   VR L  TQ   + G+ +K   L+EI + G  ++ E++ +A     K +    VF   +++D+I
Sbjct:    8 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL--------------------TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVI 208          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 62/218 (28.44%), Postives = 100/218 (45.87%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTH-IVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            +   PR GS+ F PRKRAA+   ++K++P++D  K   L    GYK GMTH +V D +K  S  +  +    VT++E           Y KT RGL+ +  V A +L EE+ R+                  +Y   E    IQ  L+K +     ++VL HT   K+  + +KK  + E  + G    EK++ A      ++    +  + + +D I
Sbjct:    3 RHHQPRKGSVAFSPRKRAAKETPRIKSWPQNDEPK---LLGLAGYKVGMTHALVTDSDK-NSPTNGMDVFTPVTVLEVPPVVVMGIRAYEKTSRGLKVITEVLADNLDEELSRKI-------------SLPKEYNKSEAIAKIQGVLDKTED----IKVLVHTN-PKVTSVPKKKPDIFECGIGGANPEEKLNTALELLGNEVKASDILNEGQFVDAI 198          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 62/223 (27.80%), Postives = 102/223 (45.74%), Query Frame = 2
Query:   50 RMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDI 712
            R   R    PR GSL F PRKRA+R   +++++P ++     R+  F GYKAGMTH +   + P S    +E    VTI++           Y  TP G R +   WA+   E    R +                     +G+     ++E++     V  +RV+  TQ +K  G+ +KK  +ME ++ G  + E+ +YA     ++I    VF + E++D+
Sbjct:    3 RGGRRNPGRPRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVFT-----------------VPKDGEAGDLDKIEELVDEGIVEEIRVIVATQPKK-AGVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDV 204          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 62/217 (28.57%), Postives = 99/217 (45.62%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            K   PR GSL F PRKRA R   K++++P+ +  K   L AF  YKAG TH +     P S    ++    VT++E           Y K  +GL++L  VWA    +E+ R+                       +  K+   +L+++      VR + HT   K   L +KK  ++EI++ G  I++ + YA     K++ ++ VF   E ID +
Sbjct:    4 KRNRPRRGSLAFSPRKRAKRPVPKIRSWPERETVK---LLAFPVYKAGTTHALYKENNPKSPNADQDVFTPVTVMEAPDITIAGIRAYGKDTKGLKALTEVWADSFDKELGRKI-------------------NLPKEPKANTEKLDEVADKIVEVRAIVHTN-PKDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTV 197          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 60/216 (27.78%), Postives = 96/216 (44.44%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDI 712
            PR GSLGF PRKR+     +  ++P DD     +   F GYKAGMTH+V   ++P S     E    VT+IET          Y  TP G R L  VW      E+ R                       D    + + Q+    +   +  +R++ HT    +  + +KK  +ME +V GG++++++D+A    E   +  ++ +F+  E  D+
Sbjct:    7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-----------------DVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADV 203          
The following BLAST results are available for this feature:
BLAST of FC875506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL3_STAMF1.252e-1727.1750S ribosomal protein L3P OS=Staphylothermus marin... [more]
RL3_CALMQ1.252e-1730.0050S ribosomal protein L3P OS=Caldivirga maquilinge... [more]
RL3_PYRKO2.136e-1731.9850S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_HALSA2.136e-1730.7750S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS32.136e-1730.7750S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_PYRIL2.789e-1729.6050S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_METS32.789e-1728.4450S ribosomal protein L3P OS=Methanobrevibacter sm... [more]
RL3_METKA2.789e-1727.8050S ribosomal protein L3P OS=Methanopyrus kandleri... [more]
RL3_META32.789e-1728.5750S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_HALMA2.789e-1727.7850S ribosomal protein L3P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionC31404F10EF CTVClemen1 Citrus clementina cDNA clone C31404F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875506 ID=FC875506; Name=FC875506; organism=Citrus clementina; type=EST; length=715bp
GCCAGCTCTAGAGCACAACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGA
GAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTT
CTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCC
CAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACA
AGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAG
CTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCC
AATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTC
GCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGA
AGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATA
CTCAAAGCAGTATGAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGC
TGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACT
CAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGA
AATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATG
GCTTCTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAAGATGAG
ATGATTGACATCATC
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