FC875506

Overview
NameFC875506
Unique NameFC875506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:13..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.758e-17
Identity = 65/223 (29.15%), Postives = 101/223 (45.29%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE    VT+++           Y   P     RS+  VWA  L   +RR                      T   K  +  Q++K++++  V   VR L  TQ   + G+ +K   L+EI + G  ++ E++ +A     K +    VF   +++D+I
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRRVL--------------------TLPEKADVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVI 204          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.758e-17
Identity = 67/223 (30.04%), Postives = 101/223 (45.29%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            K   PR GS+G  PRKRAA    +V+ +P  +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P    LRS   VWA  L + + R                      T   K  +  Q++++++Y  V   VR L  TQ   + G+ +K   L+EI + G   I E++ +A     K +    VF   +++D+I
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPDVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLFVWGFRLYTLDPTNGYLRSAAEVWAGELPKHLSRVL--------------------TLPEKVDVDKQMKQVEEYRDVAVEVRALVATQ-PHLSGIGKKTPELLEIPIGGVPNIDERIKFAISLLGKTVSPKDVFSPGQLVDVI 204          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 65/223 (29.15%), Postives = 104/223 (46.64%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P     R++  VWA  L + + R                      T   K  +  QL+K++++  V   VR L  TQ   + G+ +K   L+EI + G  ++ E++++A     K +    VF   +++D+I
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASELPKFLHRVL--------------------TLPEKLDVDKQLKKVEEFRDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVI 204          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 65/220 (29.55%), Postives = 106/220 (48.18%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP-RGLR-SLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P  G + ++   W      ++RR                   +++T++  K+    LE+ +  A  VRVL  TQ R + G+ +K   ++EI V G  +I E++++A     K +    VF   +++D+I
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVAAVRLYTLDPTNGYKVAVGEAWVSEPPADLRR-------------VLTLPEKFDTEKQLKA----LEEYRDVAVDVRVLVATQPR-LSGIGKKTPEVLEIPVGGVPSIDERINFAISLLGKTVSPKDVFTPGQLVDVI 204          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_METS5 (50S ribosomal protein L3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 63/224 (28.12%), Postives = 98/224 (43.75%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRS-LNTVWAQ--HLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            M HRK   PR GS G  PRKR+       +++P+ +   P  L  F+GYK GMTHI    E   S +  KE    VT++ET          Y    RG  S +  VW       + + RR                  + + +   K I++ LE +    S  R+L  TQ   +  L +K   ++E+Q+ GG    +++Y        + V  VF++ +++DII
Sbjct:    1 MGHRKLSSPRRGSAGLRPRKRSEELLPSPRSYPEVNLPNPVTL-GFVGYKVGMTHIFMIDEDRSSSMFGKEIYVPVTVLETPPIYVLALRAYGLNNRGEHSVMGEVWGDLGDFGKFITRRI-----------RGLKIDKEKKEHQLKDIESNLESV----SYFRLLVSTQPHLIPALGKKTPDIVEVQIGGGNTKNQLEYGLKLLGNTLSVRDVFKEGQLMDII 208          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 60/212 (28.30%), Postives = 93/212 (43.87%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDI 712
            PR GSL + PRKRA     K  ++P  D  +P  L +F GYK GMTH++   +   S    K+    VTIIE           Y     G R+L  VW + LS  + RR                  +Y  + G K++   +       + +  L +TQ   + G+ +K   LME+ + GGT+ +KV++A      ++ +  V    E  D+
Sbjct:    7 PRRGSLAYSPRKRAKSQVPKYHSWPARD-GEPI-LQSFAGYKVGMTHVIMVDDHKNSPTEGKDIMVPVTIIEIPPMKVAAIRAYTADTYGKRALTEVWTEQLSTLLGRRI-------------TLPKKYSEEAGFKALSEAV--AAGTVTELHALMYTQPDTLTGVPKKVPELMEVCIGGGTLEQKVEFAQSIIGNEVNLADVIGAGEYADV 201          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 63/215 (29.30%), Postives = 101/215 (46.98%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPK--DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSE-EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDI 712
            PR GSLG+ PR RA   + K++ + +  D P    ++  F+G+KAGM+HIV   ++P S     E    VTI+E           Y  +P G + +   W   L   E      KN               Y+TDE    I A+L K K   + +RV+  T   ++ G+ +K   LME ++ GG +A++ ++A     K + +  VF   E++D+
Sbjct:    7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQP----KIQGFVGFKAGMSHIVMVDDRPHSATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKN--------------GYKTDEQLAKI-AELVK-KGVVADLRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDV 201          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 61/214 (28.50%), Postives = 95/214 (44.39%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFP--KDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDI 712
            PR GSL + PRKRA     K  A+P  + +P+    L  F GYK GMTH++   +   S    K+    VT+IE           Y     G   L  VWA    +E+ RR                   Y+ +E +K I+  LE   K   VV  L +T+   + G+ +K   LME +++GG++ E+ +Y      K   + ++F+  +  D+
Sbjct:    7 PRMGSLAYSPRKRAKSPVPKYHAWPAYQGEPA----LQGFAGYKVGMTHVIMVDDHAHSPNEGKDIMVPVTVIEVPDMRVAAIRVYRHDTYGNHVLTEVWADSFDKELSRRL-------------NLSKNYKREEAEKKIREALE-ADKIVDVV-ALTYTRPSVLTGVPKKVPDLMETRIDGGSMTERFEYGLSMLGKDFDIRSLFKVGQYTDV 201          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 55/213 (25.82%), Postives = 102/213 (47.89%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            PR GS+GF PRKRA+R   ++K +PK +  KP    AF  YK GMTH + ++       + +     VT++E           Y K    L+ +++++   L + V R+  K                Y  +E K+   ++ +     A  V+++  TQ  K+K   +K   + +I + G  + +K++YA     K++ ++ VF++ + +D+I
Sbjct:    9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKP---LAFAAYKVGMTHTILNI-------NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------------LKNYNFEEKKEQFLSKADN----ADEVKIIVSTQPWKIK--LKKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVI 192          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 63/212 (29.72%), Postives = 96/212 (45.28%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDI 712
            PR GSL + PRKRA     K +++P+ +      L  F GYKAGMTH++   +   S    KE    VT+IE           YVK   G   L  VWA++L E +  R  K                 +T+   K+ +     I     V+ VL +T+  ++ G+ +K   LMEI+V GG+  E+ DYA       + + ++  + +  DI
Sbjct:    6 PRAGSLAYYPRKRAKGIVPKYQSWPEYNGQP--MLQGFAGYKAGMTHVIMIDDHKKSPTEGKEVMVPVTVIEIPAMTVAAIRVYVKDTYGKHPLTEVWAENL-EALSGRITK----------------AKTNNAAKATEKINAAIGDVVEVM-VLMYTKPTELTGVPKKVPDLMEIRVAGGSAQERFDYALSILGTDVDMKSLLSEGQFADI 197          
The following BLAST results are available for this feature:
BLAST of FC875506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL3_THENV4.758e-1729.1550S ribosomal protein L3P OS=Thermoproteus neutrop... [more]
RL3_PYRAR4.758e-1730.0450S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]
RL3_PYRAE8.116e-1729.1550S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_PYRCJ4.028e-1629.5550S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]
RL3_METS54.028e-1628.1350S ribosomal protein L3P OS=Metallosphaera sedula... [more]
RL3_METPE8.973e-1628.3050S ribosomal protein L3P OS=Methanosphaerula palu... [more]
RL3_UNCMA1.172e-1529.3050S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_METHJ1.999e-1528.5050S ribosomal protein L3P OS=Methanospirillum hung... [more]
RL3_NANEQ2.611e-1525.8250S ribosomal protein L3P OS=Nanoarchaeum equitans... [more]
RL3_METLZ3.410e-1529.7250S ribosomal protein L3P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionC31404F10EF CTVClemen1 Citrus clementina cDNA clone C31404F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875506 ID=FC875506; Name=FC875506; organism=Citrus clementina; type=EST; length=715bp
GCCAGCTCTAGAGCACAACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGA
GAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTT
CTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCC
CAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACA
AGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAG
CTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCC
AATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTC
GCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGA
AGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATA
CTCAAAGCAGTATGAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGC
TGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACT
CAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGA
AATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATG
GCTTCTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAAGATGAG
ATGATTGACATCATC
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