FC875507

Overview
NameFC875507
Unique NameFC875507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:12..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.215e-51
Identity = 103/201 (51.24%), Postives = 125/201 (62.19%), Query Frame = 3
Query:  111 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATD V+S +SAIWFWMT Q PKPSCH+VIT  W+PS
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPS 246          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.199e-50
Identity = 104/210 (49.52%), Postives = 129/210 (61.43%), Query Frame = 3
Query:  111 CGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFPAFG +GN   R RE+AAF  QT HETTGGW  AP G ++WGYCF  E +PPS YC  +  +PC    KYYGRGPIQL++N+NY                    ATD  +S ++A+WFWMT Q  KPS H+VIT  W PS
Sbjct:   63 CGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPS 266          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.127e-50
Identity = 93/184 (50.54%), Postives = 120/184 (65.22%), Query Frame = 3
Query:  156 TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN-LNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  + +E+AAF AQT HETTGGW  AP G YAWGYCF+SE +    YC+  ++PC    KYYGRGPIQLT NYNY                    +T+P +S ++AIWFWMT Q  KPS H+VIT  W PS
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPS 256          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.216e-49
Identity = 98/183 (53.55%), Postives = 118/183 (64.48%), Query Frame = 3
Query:  162 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   R RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +PC  GK YYGRGPIQL+ NYNY                    ATDP +S ++A+WFWMTAQ PKPS H VIT +W PS
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPS 257          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 194.512 bits (493), Expect = 4.619e-49
Identity = 104/214 (48.60%), Postives = 127/214 (59.35%), Query Frame = 3
Query:  111 CGSGVVCGE----RDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            CGS   CG+    + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    R RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +PC  GK YYGRGPIQL+ NYNY                    ATDP +S ++A+WFWMTAQ PKPS H VIT +W PS
Sbjct:   43 CGSTPYCGDGCQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPS 254          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.880e-49
Identity = 95/186 (51.08%), Postives = 115/186 (61.83%), Query Frame = 3
Query:  153 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   + RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +PC    +YYGRGPIQL+ NYNY                    ATD  +  ++AIWFWMTAQPPKPS H VI  +W PS
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPS 202          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.029e-48
Identity = 95/186 (51.08%), Postives = 116/186 (62.37%), Query Frame = 3
Query:  153 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   R R++AAF AQT HETTGGW  AP G +AWGYCF  E    + YC  +  +PC    +YYGRGPIQL+ NYNY                    ATDP +S ++A+WFWMTAQ PKPS H VIT +W PS
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPS 202          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.293e-48
Identity = 98/214 (45.79%), Postives = 126/214 (58.88%), Query Frame = 3
Query:  111 CGSGVVCGERDTGH----------GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI--SPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPSXN 704
            CGSG  C  + +G           G  G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   R RE+AAF AQT HETTGGW  AP G Y+WGYCF  E   +  S YC  +  +PC    KYYGRGPIQ+++NYNY                    A+D  +S ++A WFWMT Q PKPSCH V+T +W P+ N
Sbjct:   51 CGSG--CQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGN 260          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.311e-47
Identity = 90/180 (50.00%), Postives = 114/180 (63.33%), Query Frame = 3
Query:  171 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+  E   P  YC  +  +PC    KY+GRGPIQ+++NYNY                    A D V+S ++A+WFWMTAQ PKPS H+VIT  W PS
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY--GAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPS 182          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.311e-47
Identity = 92/176 (52.27%), Postives = 113/176 (64.20%), Query Frame = 3
Query:  171 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R RE+AAFF QT HETTGGW  AP G +AWGYC ++EI+P  P           YYGRGPIQLT  YNY                    ++DPV++ ++AIWFWMTAQ PKPSCH+VIT++W PS
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP----------PYYGRGPIQLTHKYNYQ--LAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPS 189          
The following BLAST results are available for this feature:
BLAST of FC875507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI3_SOLTU2.215e-5151.24Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ3.199e-5049.52Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA7.127e-5050.54Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIA_SECCE1.216e-4953.55Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU4.619e-4948.6026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_HORVU7.880e-4951.0826 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE1.029e-4851.08Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI1_ORYSJ2.293e-4845.79Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC3.311e-4750.00Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI11_ORYSJ3.311e-4752.27Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionC31404F11EF CTVClemen1 Citrus clementina cDNA clone C31404F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875507 ID=FC875507; Name=FC875507; organism=Citrus clementina; type=EST; length=706bp
AAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGCTTATT
GCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTC
AGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCC
ACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTT
GAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTT
CTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTG
GTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTT
GCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGG
AGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCC
CCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGT
CCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCT
AGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATC
CAGTACTATCATTNCAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCA
CCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGN
CAATGA
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