FC875507

Overview
NameFC875507
Unique NameFC875507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:12..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.375e-47
Identity = 97/202 (48.02%), Postives = 120/202 (59.41%), Query Frame = 3
Query:  111 CGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            C  G  CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+     RE+AAF AQT HETTGGW  AP G Y+WGYCF  E +  +P YC     +PC    KYYGRGPIQ+T+NYNY                    A+D  +S ++A WFWMT Q PKPSCH VIT +W PS
Sbjct:   57 CSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPS 254          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 91/189 (48.15%), Postives = 112/189 (59.26%), Query Frame = 3
Query:  153 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +     RE+AAF AQT HETTGGW  AP G YAWGYCF  E    +   YC  +  +PC    KYYGRGPIQL++N+NY                    A+D  +S  +A WFWMT Q PKPSCH V T +W PS
Sbjct:   75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPS 261          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.426e-44
Identity = 88/182 (48.35%), Postives = 109/182 (59.89%), Query Frame = 3
Query:  153 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++S ++AIWFWMTAQ  KPSCH VI  +W PS
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPS 187          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.844e-44
Identity = 84/176 (47.73%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  186 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPP-KPSCHEVITDEWKPS 698
            +  MFE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  R RE+AAFFAQT  ET+G         + WGYC ++E++P S YC+     +YPC   YYGRGP+QL WNYNY  C                 ATDPVLS ++A+WFWM       PSCHEVIT EW PS
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPS 241          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 87/182 (47.80%), Postives = 108/182 (59.34%), Query Frame = 3
Query:  153 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++S ++AIWFWMT Q  KPSCH VI  +W PS
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPS 187          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.469e-42
Identity = 81/188 (43.09%), Postives = 112/188 (59.57%), Query Frame = 3
Query:  147 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 695
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    R RE+AAF AQ  HETTGGW  AP G YAWG C+  EI+P S YC+     +PC  GK Y+GRGPIQ++WN+NY                     +D  ++ Q+A+WFWMT +  KPSCH+V+  E++P
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEYRP 226          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.898e-41
Identity = 87/182 (47.80%), Postives = 110/182 (60.44%), Query Frame = 3
Query:  153 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A  G +A GYCF+ E                 +YGRGPIQLT   NY                    ATD  +S ++AIWFWMTAQ  KPSCH+VIT +W PS
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVRE----------GNQMGSGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPS 181          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.140e-39
Identity = 91/201 (45.27%), Postives = 114/201 (56.72%), Query Frame = 3
Query:  111 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    +  RE+AAFF QT HETTGG R +   ++ WGYCF  EI    SPP             YYGRGPIQLT   NY                    +TD V+S ++AIWFWMTAQ  KPSCH+VI   W PS
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAA--GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPS 196          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 87/182 (47.80%), Postives = 105/182 (57.69%), Query Frame = 3
Query:  153 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   +P G YA GYCF+ E                 YYGRGPIQLT   NY                    ATD  +S ++AIWFWMT Q  KPSCH+VIT  W PS
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLRE----------GNQMGNGYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPS 188          
BLAST of FC875507 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 86/195 (44.10%), Postives = 101/195 (51.79%), Query Frame = 3
Query:  114 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKPS 698
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HET G W  A G +Y WGYC +                              NYNY  C                  TDP ++ ++A+WFWMT Q PKPSCH VIT+ W PS
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLLQEPELVE--TDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPS 228          
The following BLAST results are available for this feature:
BLAST of FC875507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI3_ORYSJ7.375e-4748.02Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ2.372e-4548.15Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI3.426e-4448.35Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI8_POPTR5.844e-4447.73Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIA_SOLLC7.632e-4447.80Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI10_ORYSJ5.469e-4243.09Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC7.898e-4147.80Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ1.140e-3945.27Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY3.318e-3947.80Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_POPTR3.318e-3944.10Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionC31404F11EF CTVClemen1 Citrus clementina cDNA clone C31404F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875507 ID=FC875507; Name=FC875507; organism=Citrus clementina; type=EST; length=706bp
AAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGCTTATT
GCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTC
AGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCC
ACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTT
GAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTT
CTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTG
GTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTT
GCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGG
AGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCC
CCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGT
CCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCT
AGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATC
CAGTACTATCATTNCAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCA
CCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGN
CAATGA
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