FC875520

Overview
NameFC875520
Unique NameFC875520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10250 contig Ccv1_Contig10250:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.200e-25
Identity = 55/159 (34.59%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            GACG+ +          + G   ++KDG GCG+C+Q+RC N   CSG    VI+TD+N+   ++  F +S  AF A++  G+   +   G++D+++KRVPC +    +   VEE S  P Y AV V Y+ G  ++V +D+ +  S +W  M  ++G++W
Sbjct:   63 GACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPACSGNPETVIITDMNYYPVSKYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGS-NPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIW 220          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.873e-25
Identity = 56/169 (33.14%), Postives = 98/169 (57.99%), Query Frame = 1
Query:  130 FSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYK-NQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            +   S  + GACG  ++ L    G ++ G   ++KDG GCG+C++++C+ P  CS +   V +TD+N+   +   F  S +AF A++  GK  ++ K G++D++++RV C+Y   Q +   VE+ S  PNYLAV V +     +++ MD+ + G   W  M  ++GA+W
Sbjct:   55 YGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKCEQPAACSKQPVTVFITDMNYEPISAYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGS-NPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIW 222          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.752e-25
Identity = 53/161 (32.92%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            + GACGY ++  +   G    G   ++KDG GCG+CF+++C  P  CSG+   V +TD N        F +S  AF +++ +G+ Q++   G ++++++RV C+Y +        E +  PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++GAVW
Sbjct:   60 NGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKCTKPESCSGEAVTVTITDDNEEPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAVW 220          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.900e-25
Identity = 53/161 (32.92%), Postives = 90/161 (55.90%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQT--DFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            + GACGY  +  +   G  + G   ++KDG GCG+CF+++C  P  CS K   + +TD+N        F +S  AF A++  GK +++ K G++D +++RV C+Y          E +  PNYLA+ V Y  G  ++V +++ + GS  W  +  ++GA+W
Sbjct:   60 NGGACGYKDVDKAPFLGMNSCGNDPIFKDGKGCGSCFEIKCSKPEACSDKPALIHVTDMNDEPIAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIKEKGSEEWKALKESWGAIW 220          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25
Identity = 61/164 (37.20%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  157 GACGY-GSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH-----SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGS-SNWGYMSRNYGAVW 627
            GACGY G++  +     +AAG PS+YK G GCG+C+Q++C   + CSG    V+LTD        S    F +S  AF A++N G+   +   GV+ ++Y RVPC +    L   V+  S  PNY AV V Y+ G  ++  +++ Q G+ + W  M +++GAVW
Sbjct:   56 GACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVTVVLTDECPGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVKLTFVVDVGS-NPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVW 218          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 62/167 (37.13%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  157 GACGY-GSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH-----SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGS-SNWGYMSRNYGAVWDTS 636
            GACGY  ++  +     +AAG PS+YK G GCG+C+Q++C   + CSG    V+LTD        S    F +S  AF A++N G+   +   GV+ ++Y RVPC +    L   V+  S  P+Y AV V Y+ G  ++  MD+ Q G+ + W  M +++GAVW  S
Sbjct:   56 GACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVTVVLTDECPGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVMLTFAVDAGS-NPSYFAVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWKLS 221          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 60/166 (36.14%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  142 SALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDV--AQVGSSNWGYMSRNYGAVW 627
            +A + GACG+  +      G  + G   LYK G GCG+C+++RC     CSG    V +TD+N+   +Q  F +S  AF  L+  G+  D+ + G++DV++ RVPCE+    +   VEE S  P YLAV V Y+ G  ++  +D+  A  G   W  M  ++G+VW
Sbjct:   64 AADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPACSGNAQTVAITDMNYFPLSQYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGS-SPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVW 228          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 1
Query:  136 QASALSSGACGYGS-LALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-------LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQV-GSSNWGYMSRNYGAVW 627
            Q      GACGY S +        +AAG PSL+K+G GCG+C+Q++C     CSG+   V++TD       LN +    F +S  AF A++N+G G  +   GV+ ++YKRVPC +   N+A +V+  S  P YLA+ V Y  G  ++ A+ + +  G   W  M +++GA W
Sbjct:   57 QGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGNRACSGRPVTVVITDSCPGGVCLNEA--AHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFA-MNVAFKVDAGS-NPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATW 225          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 64/181 (35.36%), Postives = 98/181 (54.14%), Query Frame = 1
Query:  133 SQASALSSGACGY-GSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH-----SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSS----NWGYMSRNYGAVWDTSRVP 645
            +  S    GACGY G +        +AAG PS+Y+ G GCG+C+Q++C     CSGK   V+LTDL            F +S  AF A++  G+   +   G + V+Y RVPC+++  ++A RV+  S +  YLAV V  + G  ++ A+D+ Q G S    +W  M +++GAVW  +  P
Sbjct:   49 ANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPSCSGKPVTVVLTDLCPGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQ-YYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNSGP 228          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPMG 651
            + GACG  ++ L    G  A G   ++KDG GCG+C+++RCK    CSG    V +TD+N+       F +S +AF +L+  G    I   G++DVE++RV C+Y      V   E    PNYLAV V Y     ++V M++    S+ W  M  ++GA+W  DT++   G
Sbjct:   62 NGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG 232          
The following BLAST results are available for this feature:
BLAST of FC875520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EXPB3_ORYSJ2.200e-2534.59Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB9_ORYSJ2.873e-2533.14Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAL1_LOLPR3.752e-2532.92Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]
EXPB1_ORYSJ4.900e-2532.92Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB15_ORYSJ6.400e-2537.20Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB18_ORYSJ8.358e-2537.13Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB8_ORYSJ1.092e-2436.14Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB5_ORYSJ1.426e-2436.42Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB14_ORYSJ1.862e-2435.36Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXPB1_MAIZE4.148e-2435.67Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31404H01EF CTVClemen1 Citrus clementina cDNA clone C31404H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875520 ID=FC875520; Name=FC875520; organism=Citrus clementina; type=EST; length=728bp
GGTCAAATTTTTGCATTTGTATCCTATCTTTCTCATTAAACAATGGTTTT
GTTTCTTTGCTTTCTCTTCTTTCTCTTCTCTTCTGCTACTGCTTGTGATC
GCTGTGTGCACCAAACCAAGGTTGCTTATTTCTCCCAAGCCTCTGCACTT
TCATCCGGGGCATGTGGATATGGTTCATTAGCATTAAGCTTCAATGGTGG
ACACCTTGCTGCTGGTGTTCCTTCCCTTTACAAAGATGGAGCTGGTTGTG
GTGCATGCTTTCAAATGAGATGCAAGAACCCAACTCTGTGTAGCGGCAAA
GGAACCAGAGTGATTCTGACTGATCTCAATCACAGCAACCAAACAGATTT
TGTTATCAGCAGCAGAGCTTTCATGGCCTTATCCAACCAGGGCAAGGGCC
AAGACATTTTAAAACTTGGAGTTGTCGATGTAGAATACAAAAGGGTTCCA
TGTGAATATAAAAACCAGAACTTGGCTGTGCGTGTGGAAGAATCAAGTCA
AAAACCAAATTATTTAGCAGTTAAAGTGTTGTATCAGGGTGGTCAAACAG
AAATGGTAGCAATGGATGTAGCTCAGGTTGGTTCTTCAAACTGGGGTTAC
ATGAGCAGAAATTATGGGGCAGTTTGGGATACAAGTAGAGTGCCAATGGG
GCATTGCAGTTCAGATTTGTGGTACATCANGCTATGATGGCAAGTGGATT
TGGGCAAAAAATGTCTTCAGCTGATTGG
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