FC875520

Overview
NameFC875520
Unique NameFC875520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 55/162 (33.95%), Postives = 96/162 (59.26%), Query Frame = 1
Query:  151 SSGACGYGSLALS-FNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            + G CGY  +  + FN       VP ++KDG GCG+CF+++C  P  CSGK   V +TD+N+       F ++  AF A++ +G+ + + K G++D++++RV C+Y    +   +E+    PNYLA+ V Y  G  ++VA+D+ + GS  +  +  ++GA+W
Sbjct:   68 NGGGCGYKDVNKAPFNSMGACGNVP-IFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY-GSKVTFHLEKGC-NPNYLALLVKYVDGDGDIVAVDIKEKGSDTYEPLKHSWGAIW 226          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: MPAP1_PHAAQ (Major pollen allergen Pha a 1 OS=Phalaris aquatica PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 51/161 (31.68%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            + GACGY  +  +   G    G   ++KDG GCG+CF+++C  P  CSG+   V +TD N        F +S  AF +++ +G+ +++   G ++++++RV C+Y +        E    PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++GA+W
Sbjct:   66 NGGACGYKDVDKAPFNGMTGCGNTPIFKDGRGCGSCFELKCSKPESCSGEPITVHITDDNEEPIAPYHFDLSGHAFGSMAKKGEEENVRGAGELELQFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAIW 226          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: MPAH1_HOLLA (Major pollen allergen Hol l 1 OS=Holcus lanatus PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 53/161 (32.92%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            + GACGY  +      G    G   ++KDG GCG+CF+++C  P  CSG+   V +TD N        F +S  AF +++ +G+ Q +   G ++++++RV C+Y +        E    PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++GAVW
Sbjct:   62 NGGACGYKDVDKPPFSGMTGCGNTPIFKDGRGCGSCFEIKCTKPESCSGEPVTVHITDDNEEPIAPYHFDLSGHAFGSMAKKGEEQKLRSAGELELKFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYIDGDGDVVAVDIKEKGKDKWIELKESWGAVW 222          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 58/171 (33.92%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPMG 651
            + GACG  ++ L    G  A G   ++KDG GCG+C+++RCK    CSG    V +TD+N+       F +S +AF +L+  G    +   G++DVE++RV C+Y      V   E    PNY+AV V +     ++V M++    S+ W  M  ++GA+W  DT++   G
Sbjct:   62 NGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVFITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG 232          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 55/162 (33.95%), Postives = 96/162 (59.26%), Query Frame = 1
Query:  151 SSGACGYGSLALS-FNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            + G CGY  +    FN       +P ++KDG GCG+CF+++C  P  CSGK   V +TD+N+       F ++  AF A++ +G+ + + K G++D++++RV C+Y +  +   +E+    PNYLA+ V Y  G  ++VA+DV + GS  +  +  ++GA+W
Sbjct:   69 NGGGCGYKDVNKPPFNSMGACGNIP-IFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY-DSKVTFHLEKGC-GPNYLALLVKYVDGDGDIVAVDVKEKGSDTYEPLKHSWGAIW 227          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: MPAP1_PHLPR (Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLPI PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 52/161 (32.30%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            + GACGY  +      G    G   ++K G GCG+CF+++C  P  CSG+   V +TD N        F +S  AF A++ +G  Q +   G ++++++RV C+Y          E    PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++GA+W
Sbjct:   60 NGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIW 220          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22
Identity = 55/163 (33.74%), Postives = 92/163 (56.44%), Query Frame = 1
Query:  157 GACGYGS-LALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-----LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            GACGY + +        +AAG PSLYK G GCGAC++++C     CSG+   V++TD     +  +    F +S  +  A++  G    +   G++ V+Y+RVPC+Y   N+A RV++ +  P Y  V + ++ G  ++ A+D+ + G   W  M +N+GA+W
Sbjct:   83 GACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAACSGQPATVVITDECPGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGA-NPFYFEVLIEFEDGDGDLNAVDLMEAG-CGWTPMVQNWGALW 243          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22
Identity = 53/171 (30.99%), Postives = 93/171 (54.39%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN----------WGYMSRNYGAVW 627
            + GACG+ ++ L       + G   L+KDG GCG+C+Q+RC     CSG    VI+TD+N+   +   F +S  AF A++   +  ++   G++D++++RVPC+Y    +   VE+ S  P Y+A+ V Y+ G  ++V +D+ +   S           W  M  ++G++W
Sbjct:  111 NGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVSLYHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGS-NPVYMAILVEYENGDGDVVQVDLMESRYSTGGVDGTPTGVWTPMRESWGSIW 280          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 59/178 (33.15%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  133 SQASALSSGACGYGSLA-LSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-----LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPM 648
            ++    + GACGYGSL  +      + +  P L+KDG GCGAC++++C +  +CS +   VI+TD     L    +T F +S  AF  ++  G G  +   G + V Y+R  C+Y  +N+A RV E S    +L++ V ++ GQ ++ +M + Q  S  W  M   +GA W   R P+
Sbjct:   59 AEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDECPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTN-FWLSLLVEFEDGQGDIGSMQIKQANSVEWLDMKHVWGATWCLVRGPL 235          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21
Identity = 56/172 (32.56%), Postives = 92/172 (53.49%), Query Frame = 1
Query:  133 SQASALSSGACGYGSLA-LSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS------NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            ++    S GACGYGSL  +      + A  P L+K G GCGAC+++RC + T+CS +   +I TD + S        T F +S  AF  ++  G    I   G++++ Y+R  C+Y+ +N+A  V   S    +L++ + Y+ G+ ++ +M + Q GS  W  M   +GA W
Sbjct:   51 AEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGS-TDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 221          
The following BLAST results are available for this feature:
BLAST of FC875520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EXB11_MAIZE9.241e-2433.95Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
MPAP1_PHAAQ2.059e-2331.68Major pollen allergen Pha a 1 OS=Phalaris aquatica... [more]
MPAH1_HOLLA3.512e-2332.92Major pollen allergen Hol l 1 OS=Holcus lanatus PE... [more]
EXPB9_MAIZE3.512e-2333.92Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]
EXB10_MAIZE3.512e-2333.95Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
MPAP1_PHLPR1.022e-2232.30Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLP... [more]
EXB11_ORYSJ1.334e-2233.74Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB7_ORYSJ2.973e-2230.99Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB17_ORYSJ1.927e-2133.15Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB1_ARATH4.293e-2132.56Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC31404H01EF CTVClemen1 Citrus clementina cDNA clone C31404H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875520 ID=FC875520; Name=FC875520; organism=Citrus clementina; type=EST; length=728bp
GGTCAAATTTTTGCATTTGTATCCTATCTTTCTCATTAAACAATGGTTTT
GTTTCTTTGCTTTCTCTTCTTTCTCTTCTCTTCTGCTACTGCTTGTGATC
GCTGTGTGCACCAAACCAAGGTTGCTTATTTCTCCCAAGCCTCTGCACTT
TCATCCGGGGCATGTGGATATGGTTCATTAGCATTAAGCTTCAATGGTGG
ACACCTTGCTGCTGGTGTTCCTTCCCTTTACAAAGATGGAGCTGGTTGTG
GTGCATGCTTTCAAATGAGATGCAAGAACCCAACTCTGTGTAGCGGCAAA
GGAACCAGAGTGATTCTGACTGATCTCAATCACAGCAACCAAACAGATTT
TGTTATCAGCAGCAGAGCTTTCATGGCCTTATCCAACCAGGGCAAGGGCC
AAGACATTTTAAAACTTGGAGTTGTCGATGTAGAATACAAAAGGGTTCCA
TGTGAATATAAAAACCAGAACTTGGCTGTGCGTGTGGAAGAATCAAGTCA
AAAACCAAATTATTTAGCAGTTAAAGTGTTGTATCAGGGTGGTCAAACAG
AAATGGTAGCAATGGATGTAGCTCAGGTTGGTTCTTCAAACTGGGGTTAC
ATGAGCAGAAATTATGGGGCAGTTTGGGATACAAGTAGAGTGCCAATGGG
GCATTGCAGTTCAGATTTGTGGTACATCANGCTATGATGGCAAGTGGATT
TGGGCAAAAAATGTCTTCAGCTGATTGG
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