FC875520
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14 Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 1 Query: 157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDLNHSN--------------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGA 621 GACGYG+L S G AA +L+ DG GCG CFQ+ C K+P SGK T V T+L N +T F ++ AFM L+ + G++ V Y+RVPC+ ++ + + + +S +L + V+ GG ++ +M V + +NW MS N+GA Sbjct: 56 GACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLA-------YWRAGIIPVAYRRVPCQ-RSGGMRFQFQGNSY---WLLIFVMNVGGAGDIKSMAV-KGSRTNWISMSHNWGA 213
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13 Identity = 61/207 (29.47%), Postives = 92/207 (44.44%), Query Frame = 1 Query: 85 ATACDRCVHQTKVAYF---SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC--KNPTLCSGKGTRVILTDLN--------HSNQTDFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMGHCSS 663 A AC R V Q+ A F S GACGYG+L + G + AA +L+ DGA CGAC+ + C C G + +T N SN + R +S + + + G+V V YKRVPC+ ++ +R S +Y + + G + +VA + ++ W MSRN+GA W ++ G S Sbjct: 20 AFACKRSVAQSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQ---RSGGIRFAISGH--DYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLS 221
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13 Identity = 55/179 (30.73%), Postives = 79/179 (44.13%), Query Frame = 1 Query: 139 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN------------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGA 621 AS GACGYG+L S G AA +L+KDG GCG C+QMRC C + +T N + + F +S AFM +++ + G+V V Y+RVPC + L ++ + P +L V+ G ++ M V G W MS N+GA Sbjct: 50 ASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTASCYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMAD-------WRAGIVPVMYRRVPCA-RAGGLRFALQGN---PYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGA 217
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12 Identity = 54/178 (30.34%), Postives = 85/178 (47.75%), Query Frame = 1 Query: 157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDL---NHSNQTD---------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651 GACGYG+L G AA +L+ DG CGAC+++ C ++P C ++ T+ N+S TD F +S F+ ++ K GVV V Y+R+PC ++ V+ E+ P +L V + GG ++ + V + + W M +N+G W TS V G Sbjct: 77 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDLWCNPPQKHFDLSLAMFLKIAK-------YKAGVVPVRYRRIPC---SKTGGVKF-ETKGNPYFLMVLIYNVGGAGDIKYVQVKE-NKTGWITMKKNWGQNWTTSTVLTG 242
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB13_ORYSJ (Expansin-B13 OS=Oryza sativa subsp. japonica GN=EXPB13 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11 Identity = 41/161 (25.47%), Postives = 70/161 (43.48%), Query Frame = 1 Query: 151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627 +SGACGY + + G + G ++KDG GCG+CF+++C P CS K + +TD+N F + AF A++ GK +++LK Y G ++V +++ + GS W + ++GA+W Sbjct: 60 NSGACGYKDVDKAPFLGMNSCGNDPIFKDGKGCGSCFEIKCSKPKACSDKPVLIHVTDMNDEPIAAYHFDLFGLAFGAMAKDGKDEELLK---------------------------------------YVAGDGDVVEVEIKEKGSEEWKALKESWGAIW 181
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11 Identity = 53/178 (29.78%), Postives = 84/178 (47.19%), Query Frame = 1 Query: 157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDL---NHSNQTD---------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651 GACGYG+L G AA +L+ DG CGAC+++ C ++P C ++ T+ N+S TD F +S F+ ++ K GVV V Y+R+PC ++ V+ E+ P +L V + GG ++ + V + + W M +N+G W T V G Sbjct: 71 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDLWCNPPQKHFDLSLAMFLKIAK-------YKAGVVPVRYRRIPC---SKTGGVKF-ETKGNPYFLMVLIYNVGGAGDIKYVQV-KGNKTGWITMKKNWGQNWTTITVLTG 236
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 52/182 (28.57%), Postives = 80/182 (43.96%), Query Frame = 1 Query: 157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKN-PTLCSGKGTRVILT-----DLNHSN-------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMGHCSS 663 GACGYG L G AA +L+ +G+ CGAC+++ C++ P C ++ T D N Q F +S F+ ++ K GVV V+++RVPC + E P++L + GG + AM + + W M +N+G +W T V G C S Sbjct: 109 GACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPNDNWCNPPQKHFDLSQPMFLKIAK-------YKAGVVPVKFRRVPC----AKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGT-RTQWIAMKKNWGQIWSTGVVLTGQCLS 278
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11 Identity = 50/194 (25.77%), Postives = 86/194 (44.33%), Query Frame = 1 Query: 133 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKN-PTLCSGKGTRVILTDLN----------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMGHCSS 663 S AS GACGYG+L G + AA +L+ +G CGACF+++C N P C +++T N + + F ++ F+ ++ + G+V V Y+RVPC + +R + + + V + G ++V V + + W +SRN+G W ++ V +G S Sbjct: 42 SDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGHR-YFNLVLITNVAGAGDIVRASV-KGSRTGWMSLSRNWGQNWQSNAVLVGQALS 223
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11 Identity = 50/181 (27.62%), Postives = 84/181 (46.41%), Query Frame = 1 Query: 139 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCK-NPTLCSGKGTRVILTD-------LNHSN-------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS 636 AS GACGYG+L G + AA +L+ +G CGAC++M+C +P C G V T+ L++ N F ++ AF+ ++ + G+V V ++RVPC K + + S + V + GG ++ A+ + + +W MSRN+G W ++ Sbjct: 43 ASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQ-------YRAGIVPVSFRRVPC-MKKGGIRFTINGHSY---FNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSN 212
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11 Identity = 53/181 (29.28%), Postives = 84/181 (46.41%), Query Frame = 1 Query: 139 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP-TLCSGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS 636 AS GACGYG+L + G + AA L+ DGA CG+C+++RC N C V T+L N++ D F ++ AF+ + + + G+V V Y+RVPC K + + S N + V + G + V++ + S+ W MSRN+G W ++ Sbjct: 42 ASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIG-------VYRAGIVPVSYRRVPC-VKKGGIRFTINGHSYF-NLVLVTNVAGPGDVQSVSI---KGSSTGWQPMSRNWGQNWQSN 210 The following BLAST results are available for this feature:
BLAST of FC875520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 53
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875520 ID=FC875520; Name=FC875520; organism=Citrus clementina; type=EST; length=728bpback to top |