FC875520

Overview
NameFC875520
Unique NameFC875520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10250 contig Ccv1_Contig10250:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 1
Query:  157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDLNHSN--------------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGA 621
            GACGYG+L  S  G   AA   +L+ DG GCG CFQ+ C K+P   SGK T V  T+L   N              +T F ++  AFM L+         + G++ V Y+RVPC+ ++  +  + + +S    +L + V+  GG  ++ +M V +   +NW  MS N+GA
Sbjct:   56 GACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLA-------YWRAGIIPVAYRRVPCQ-RSGGMRFQFQGNSY---WLLIFVMNVGGAGDIKSMAV-KGSRTNWISMSHNWGA 213          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 61/207 (29.47%), Postives = 92/207 (44.44%), Query Frame = 1
Query:   85 ATACDRCVHQTKVAYF---SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC--KNPTLCSGKGTRVILTDLN--------HSNQTDFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMGHCSS 663
            A AC R V Q+  A F      S    GACGYG+L  +  G + AA   +L+ DGA CGAC+ + C       C   G  + +T  N         SN   +    R    +S    +   + + G+V V YKRVPC+   ++  +R   S    +Y  +  +   G + +VA    +  ++ W  MSRN+GA W ++    G   S
Sbjct:   20 AFACKRSVAQSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQ---RSGGIRFAISGH--DYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLS 221          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 55/179 (30.73%), Postives = 79/179 (44.13%), Query Frame = 1
Query:  139 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN------------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGA 621
            AS    GACGYG+L  S  G   AA   +L+KDG GCG C+QMRC     C      + +T  N                  +  +  F +S  AFM +++        + G+V V Y+RVPC  +   L   ++ +   P +L   V+   G  ++  M V   G   W  MS N+GA
Sbjct:   50 ASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTASCYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMAD-------WRAGIVPVMYRRVPCA-RAGGLRFALQGN---PYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGA 217          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 54/178 (30.34%), Postives = 85/178 (47.75%), Query Frame = 1
Query:  157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDL---NHSNQTD---------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651
            GACGYG+L     G   AA   +L+ DG  CGAC+++ C ++P  C     ++  T+    N+S  TD         F +S   F+ ++         K GVV V Y+R+PC   ++   V+  E+   P +L V +   GG  ++  + V +   + W  M +N+G  W TS V  G
Sbjct:   77 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDLWCNPPQKHFDLSLAMFLKIAK-------YKAGVVPVRYRRIPC---SKTGGVKF-ETKGNPYFLMVLIYNVGGAGDIKYVQVKE-NKTGWITMKKNWGQNWTTSTVLTG 242          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB13_ORYSJ (Expansin-B13 OS=Oryza sativa subsp. japonica GN=EXPB13 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 41/161 (25.47%), Postives = 70/161 (43.48%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            +SGACGY  +  +   G  + G   ++KDG GCG+CF+++C  P  CS K   + +TD+N        F +   AF A++  GK +++LK                                       Y  G  ++V +++ + GS  W  +  ++GA+W
Sbjct:   60 NSGACGYKDVDKAPFLGMNSCGNDPIFKDGKGCGSCFEIKCSKPKACSDKPVLIHVTDMNDEPIAAYHFDLFGLAFGAMAKDGKDEELLK---------------------------------------YVAGDGDVVEVEIKEKGSEEWKALKESWGAIW 181          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 53/178 (29.78%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDL---NHSNQTD---------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMG 651
            GACGYG+L     G   AA   +L+ DG  CGAC+++ C ++P  C     ++  T+    N+S  TD         F +S   F+ ++         K GVV V Y+R+PC   ++   V+  E+   P +L V +   GG  ++  + V +   + W  M +N+G  W T  V  G
Sbjct:   71 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDLWCNPPQKHFDLSLAMFLKIAK-------YKAGVVPVRYRRIPC---SKTGGVKF-ETKGNPYFLMVLIYNVGGAGDIKYVQV-KGNKTGWITMKKNWGQNWTTITVLTG 236          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 52/182 (28.57%), Postives = 80/182 (43.96%), Query Frame = 1
Query:  157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKN-PTLCSGKGTRVILT-----DLNHSN-------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMGHCSS 663
            GACGYG L     G   AA   +L+ +G+ CGAC+++ C++ P  C     ++  T     D    N       Q  F +S   F+ ++         K GVV V+++RVPC      +     E    P++L +     GG   + AM +     + W  M +N+G +W T  V  G C S
Sbjct:  109 GACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPNDNWCNPPQKHFDLSQPMFLKIAK-------YKAGVVPVKFRRVPC----AKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGT-RTQWIAMKKNWGQIWSTGVVLTGQCLS 278          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 50/194 (25.77%), Postives = 86/194 (44.33%), Query Frame = 1
Query:  133 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKN-PTLCSGKGTRVILTDLN----------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPMGHCSS 663
            S AS    GACGYG+L     G + AA   +L+ +G  CGACF+++C N P  C      +++T  N                +  +  F ++   F+ ++         + G+V V Y+RVPC  +     +R   +  +  +  V +    G  ++V   V +   + W  +SRN+G  W ++ V +G   S
Sbjct:   42 SDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGHR-YFNLVLITNVAGAGDIVRASV-KGSRTGWMSLSRNWGQNWQSNAVLVGQALS 223          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 50/181 (27.62%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  139 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCK-NPTLCSGKGTRVILTD-------LNHSN-------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS 636
            AS    GACGYG+L     G + AA   +L+ +G  CGAC++M+C  +P  C G    V  T+       L++ N          F ++  AF+ ++         + G+V V ++RVPC  K   +   +   S    +  V +   GG  ++ A+ +    + +W  MSRN+G  W ++
Sbjct:   43 ASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQ-------YRAGIVPVSFRRVPC-MKKGGIRFTINGHSY---FNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSN 212          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 53/181 (29.28%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  139 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP-TLCSGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS 636
            AS    GACGYG+L  +  G + AA    L+ DGA CG+C+++RC N    C      V  T+L   N++   D           F ++  AF+ +        + + G+V V Y+RVPC  K   +   +   S   N + V  +   G  + V++   +  S+ W  MSRN+G  W ++
Sbjct:   42 ASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIG-------VYRAGIVPVSYRRVPC-VKKGGIRFTINGHSYF-NLVLVTNVAGPGDVQSVSI---KGSSTGWQPMSRNWGQNWQSN 210          
The following BLAST results are available for this feature:
BLAST of FC875520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EXPA7_ARATH6.638e-1434.12Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXPA3_ORYSJ3.295e-1329.47Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP30_ORYSJ7.339e-1330.73Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP26_ARATH1.635e-1230.34Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXB13_ORYSJ1.060e-1125.47Expansin-B13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH1.808e-1129.78Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP24_ARATH2.361e-1128.57Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXPA4_ARATH3.084e-1125.77Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA8_ARATH6.869e-1127.62Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ORYSJ6.869e-1129.28Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionC31404H01EF CTVClemen1 Citrus clementina cDNA clone C31404H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875520 ID=FC875520; Name=FC875520; organism=Citrus clementina; type=EST; length=728bp
GGTCAAATTTTTGCATTTGTATCCTATCTTTCTCATTAAACAATGGTTTT
GTTTCTTTGCTTTCTCTTCTTTCTCTTCTCTTCTGCTACTGCTTGTGATC
GCTGTGTGCACCAAACCAAGGTTGCTTATTTCTCCCAAGCCTCTGCACTT
TCATCCGGGGCATGTGGATATGGTTCATTAGCATTAAGCTTCAATGGTGG
ACACCTTGCTGCTGGTGTTCCTTCCCTTTACAAAGATGGAGCTGGTTGTG
GTGCATGCTTTCAAATGAGATGCAAGAACCCAACTCTGTGTAGCGGCAAA
GGAACCAGAGTGATTCTGACTGATCTCAATCACAGCAACCAAACAGATTT
TGTTATCAGCAGCAGAGCTTTCATGGCCTTATCCAACCAGGGCAAGGGCC
AAGACATTTTAAAACTTGGAGTTGTCGATGTAGAATACAAAAGGGTTCCA
TGTGAATATAAAAACCAGAACTTGGCTGTGCGTGTGGAAGAATCAAGTCA
AAAACCAAATTATTTAGCAGTTAAAGTGTTGTATCAGGGTGGTCAAACAG
AAATGGTAGCAATGGATGTAGCTCAGGTTGGTTCTTCAAACTGGGGTTAC
ATGAGCAGAAATTATGGGGCAGTTTGGGATACAAGTAGAGTGCCAATGGG
GCATTGCAGTTCAGATTTGTGGTACATCANGCTATGATGGCAAGTGGATT
TGGGCAAAAAATGTCTTCAGCTGATTGG
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