FC875520

Overview
NameFC875520
Unique NameFC875520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 52/185 (28.11%), Postives = 91/185 (49.19%), Query Frame = 1
Query:  133 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC--KNPTLCS-GKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS 636
            S  +    GACGYG+L  +  G + AA   +L+ DGA CGAC+ + C     T C  G    +  T+L   N++ ++D           F +S  A+ +++       I + G+V V +KRVPC+   ++  +R   S +  +Y  +  ++  G + +VA    +   ++W  MSRN+G  W ++
Sbjct:   34 SDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIA-------IYQAGIVPVNFKRVPCQ---KSGGIRFTISGR--DYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSN 206          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 54/191 (28.27%), Postives = 85/191 (44.50%), Query Frame = 1
Query:   97 DRCVHQTKVAYFSQASALSS---GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCK-NPTLCSGKGTRVILTDL-------NHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS 636
            D   +  + AY+       +   GACGYG L     G   AA   +L+  GA CGAC+++ C  NP  C     ++  TDL        +     F +S   F+ ++        +K  +V V Y+RVPC  K   +   V+ +   PN L +     GG  +++A+  A+   + W  MSR +G  W T+
Sbjct:   42 DTAWYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSAWCYLPNKHFDLSLPMFIKIAQ-------VKAKMVPVRYRRVPCA-KTGGVKFEVKGN---PNILTILPYNVGGAGDIIAVS-AKGSKTAWVVMSRYWGQNWTTN 220          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 54/179 (30.17%), Postives = 78/179 (43.58%), Query Frame = 1
Query:  133 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSN--------------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            S AS    GACGYG+L  +  G   AA   +L+ +G  CGACF++RC     C      V  T+L   N              +  F ++  AF  ++         + GVV V+Y+RV C  K   +   +   S    +  V V   GG  ++ A+ V +   S W  MS N+GA W
Sbjct:   38 SDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGSCLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQ-------ARAGVVPVQYRRVACA-KQGGIRFTITGHSY---FNLVLVTNVGGAGDVTAVSV-KGSRSGWQAMSHNWGANW 204          
The following BLAST results are available for this feature:
BLAST of FC875520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EXP33_ORYSJ6.869e-1128.11Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH8.972e-1128.27Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP11_ORYSJ8.972e-1130.17Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC31404H01EF CTVClemen1 Citrus clementina cDNA clone C31404H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875520 ID=FC875520; Name=FC875520; organism=Citrus clementina; type=EST; length=728bp
GGTCAAATTTTTGCATTTGTATCCTATCTTTCTCATTAAACAATGGTTTT
GTTTCTTTGCTTTCTCTTCTTTCTCTTCTCTTCTGCTACTGCTTGTGATC
GCTGTGTGCACCAAACCAAGGTTGCTTATTTCTCCCAAGCCTCTGCACTT
TCATCCGGGGCATGTGGATATGGTTCATTAGCATTAAGCTTCAATGGTGG
ACACCTTGCTGCTGGTGTTCCTTCCCTTTACAAAGATGGAGCTGGTTGTG
GTGCATGCTTTCAAATGAGATGCAAGAACCCAACTCTGTGTAGCGGCAAA
GGAACCAGAGTGATTCTGACTGATCTCAATCACAGCAACCAAACAGATTT
TGTTATCAGCAGCAGAGCTTTCATGGCCTTATCCAACCAGGGCAAGGGCC
AAGACATTTTAAAACTTGGAGTTGTCGATGTAGAATACAAAAGGGTTCCA
TGTGAATATAAAAACCAGAACTTGGCTGTGCGTGTGGAAGAATCAAGTCA
AAAACCAAATTATTTAGCAGTTAAAGTGTTGTATCAGGGTGGTCAAACAG
AAATGGTAGCAATGGATGTAGCTCAGGTTGGTTCTTCAAACTGGGGTTAC
ATGAGCAGAAATTATGGGGCAGTTTGGGATACAAGTAGAGTGCCAATGGG
GCATTGCAGTTCAGATTTGTGGTACATCANGCTATGATGGCAAGTGGATT
TGGGCAAAAAATGTCTTCAGCTGATTGG
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