FC875520
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11 Identity = 52/185 (28.11%), Postives = 91/185 (49.19%), Query Frame = 1 Query: 133 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC--KNPTLCS-GKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS 636 S + GACGYG+L + G + AA +L+ DGA CGAC+ + C T C G + T+L N++ ++D F +S A+ +++ I + G+V V +KRVPC+ ++ +R S + +Y + ++ G + +VA + ++W MSRN+G W ++ Sbjct: 34 SDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIA-------IYQAGIVPVNFKRVPCQ---KSGGIRFTISGR--DYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSN 206
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11 Identity = 54/191 (28.27%), Postives = 85/191 (44.50%), Query Frame = 1 Query: 97 DRCVHQTKVAYFSQASALSS---GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCK-NPTLCSGKGTRVILTDL-------NHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS 636 D + + AY+ + GACGYG L G AA +L+ GA CGAC+++ C NP C ++ TDL + F +S F+ ++ +K +V V Y+RVPC K + V+ + PN L + GG +++A+ A+ + W MSR +G W T+ Sbjct: 42 DTAWYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSAWCYLPNKHFDLSLPMFIKIAQ-------VKAKMVPVRYRRVPCA-KTGGVKFEVKGN---PNILTILPYNVGGAGDIIAVS-AKGSKTAWVVMSRYWGQNWTTN 220
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11 Identity = 54/179 (30.17%), Postives = 78/179 (43.58%), Query Frame = 1 Query: 133 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSN--------------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627 S AS GACGYG+L + G AA +L+ +G CGACF++RC C V T+L N + F ++ AF ++ + GVV V+Y+RV C K + + S + V V GG ++ A+ V + S W MS N+GA W Sbjct: 38 SDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGSCLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQ-------ARAGVVPVQYRRVACA-KQGGIRFTITGHSY---FNLVLVTNVGGAGDVTAVSV-KGSRSGWQAMSHNWGANW 204 The following BLAST results are available for this feature:
BLAST of FC875520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 53
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875520 ID=FC875520; Name=FC875520; organism=Citrus clementina; type=EST; length=728bpback to top |