FC875524

Overview
NameFC875524
Unique NameFC875524
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5082 contig Ccv1_Contig5082:50..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD21_MOUSE (ER lumen protein retaining receptor 1 OS=Mus musculus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 53/158 (33.54%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R    F    +++            +  ++MI    +++Y  + D F + ++VVP A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FAL
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFAL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD21_XENTR (ER lumen protein retaining receptor 1 OS=Xenopus tropicalis GN=kdelr1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 53/150 (35.33%), Postives = 82/150 (54.67%), Query Frame = 1
Query:  253 HSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            H   I +L+ K+ K ++CAG+S KSQ L AI    R   L+ +F+  Y  +              I+MI    +++Y  + D F + +++VP A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FAL
Sbjct:   12 HLSAILILLLKIWKSRSCAGISGKSQLLFAIVFTTRYLDLFTNFISLY--NTSMKMVYVASSYATIWMIYSKFKATYDGNHDTFRVEFLIVPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFAL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD21_BOVIN (ER lumen protein retaining receptor 1 OS=Bos taurus GN=KDELR1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 52/158 (32.91%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R    F    +++            +  ++MI    +++Y  + D F + ++V+P A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FAL
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVIPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFAL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ER21A_XENLA (ER lumen protein retaining receptor 1-A OS=Xenopus laevis GN=kdelr1-A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 49/148 (33.11%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  253 HSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILN-RIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            H   I +L+ K+ K ++CAG+S KSQ L AI    R    F    + +            +  ++MI    +++Y  + D F + +++VP A+LA L++    H+     IFW F +YLE+V++LPQL ++  T   E  T+HY+FAL
Sbjct:   12 HLSAIFILLLKIWKSRSCAGISGKSQLLFAIVFTARYLDLFTNYISFYNTSMKVVYVASSYATVWMIYSKFKATYDGNHDTFRVEFLIVPTAILAFLVN----HDFTPLEIFWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFAL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD21_HUMAN (ER lumen protein retaining receptor 1 OS=Homo sapiens GN=KDELR1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 52/158 (32.91%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R    F    +++            +  +++I    +++Y  + D F + ++VVP A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FAL
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWLIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFAL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ER21B_XENLA (ER lumen protein retaining receptor 1-B OS=Xenopus laevis GN=kdelr1-B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query:  253 HSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            H   I +L+ K+ K ++CAG+S KSQ L AI    R   L+ +F+  Y  +              ++MI    +++Y  + D F + +++VP A+L+ L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FAL
Sbjct:   12 HLSAIIILLLKIWKSRSCAGISGKSQLLFAIVFTTRYLDLFTNFISFY--NTSMKVVYVASSYATVWMIYSKFKATYDGNHDTFRVEFLIVPTAILSFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFAL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD2_PLAFA (ER lumen protein retaining receptor OS=Plasmodium falciparum GN=ERD2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAI-FLAVRLYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSS--YMEDKDNF-AIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  + +H + + +LI KL K K C G+S + QEL  I FL   +   FV     +            + IY+IR  L  S  Y    DNF +  Y++ PC VL+LL     ++N+ N I W+F ++LE+V++LPQL +++  + VE  T+HYV  +
Sbjct:    2 NIFRLIGDILHLVSMYILIMKLKKSKNCIGISCRMQELYLIVFLCRYIDLFFVFVSFYNTVMKITFILTIAYTIYLIRLKLPISQTYNRKVDNFKSEKYLIPPCLVLSLLT--CKTYNLYN-ILWSFSIWLESVAILPQLVLLEKQREVENITSHYVITM 158          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD2_PLAF7 (ER lumen protein retaining receptor OS=Plasmodium falciparum (isolate 3D7) GN=ERD2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAI-FLAVRLYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSS--YMEDKDNF-AIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  + +H + + +LI KL K K C G+S + QEL  I FL   +   FV     +            + IY+IR  L  S  Y    DNF +  Y++ PC VL+LL     ++N+ N I W+F ++LE+V++LPQL +++  + VE  T+HYV  +
Sbjct:    2 NIFRLIGDILHLVSMYILIMKLKKSKNCIGISCRMQELYLIVFLCRYIDLFFVFVSFYNTVMKITFILTIAYTIYLIRLKLPISQTYNRKVDNFKSEKYLIPPCLVLSLLT--CKTYNLYN-ILWSFSIWLESVAILPQLVLLEKQREVENITSHYVITM 158          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD23_DANRE (ER lumen protein retaining receptor 3 OS=Danio rerio GN=kdelr3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F ++ +  H I I +L  K+ + K+CAG+S KSQ L A+    R   L+ S++  Y  +              + +I F  R+SY  + D+F + +++VP A L+ L + + +      I W F +YLE+V++LPQL ++  T   E  TAHY+  L
Sbjct:    2 NIFRLSGDVCHLIAIIILFLKIWRSKSCAGISGKSQVLFALVFTTRYLDLFTSYISAY--NTVMKVVYLLLAYSTVGLIFFRFRNSYDSESDSFRVEFLLVPVAGLSFLENYAFTPL---EILWTFSIYLESVAILPQLFMITKTGEAESITAHYLLFL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD23_XENLA (ER lumen protein retaining receptor 3 OS=Xenopus laevis GN=kdelr3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  +  H + I +L+ K+ K K+CAG+S KSQ L A+    R    F +  + +            +V +Y+I   LR SY  + D F + +++VP   L+ L +   +      I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NIFRILGDVSHLLAIIILLLKMWKSKSCAGISGKSQLLFALVFTTRYLDLFTVFISPYNTVMKIIFLACAYVTVYLIYGKLRKSYDSENDTFRLEFLLVPVIGLSFLENYEFTPL---EILWTFSIYLESVAILPQLFMISKTGEAESITTHYLFFL 155          
The following BLAST results are available for this feature:
BLAST of FC875524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ERD21_MOUSE2.237e-1633.54ER lumen protein retaining receptor 1 OS=Mus muscu... [more]
ERD21_XENTR2.922e-1635.33ER lumen protein retaining receptor 1 OS=Xenopus t... [more]
ERD21_BOVIN2.922e-1632.91ER lumen protein retaining receptor 1 OS=Bos tauru... [more]
ER21A_XENLA3.817e-1633.11ER lumen protein retaining receptor 1-A OS=Xenopus... [more]
ERD21_HUMAN4.985e-1632.91ER lumen protein retaining receptor 1 OS=Homo sapi... [more]
ER21B_XENLA8.502e-1634.00ER lumen protein retaining receptor 1-B OS=Xenopus... [more]
ERD2_PLAFA2.474e-1534.38ER lumen protein retaining receptor OS=Plasmodium ... [more]
ERD2_PLAF72.474e-1534.38ER lumen protein retaining receptor OS=Plasmodium ... [more]
ERD23_DANRE7.198e-1532.08ER lumen protein retaining receptor 3 OS=Danio rer... [more]
ERD23_XENLA9.400e-1531.85ER lumen protein retaining receptor 3 OS=Xenopus l... [more]

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Properties
Property NameValue
Genbank descriptionC31404H05EF CTVClemen1 Citrus clementina cDNA clone C31404H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875524 ID=FC875524; Name=FC875524; organism=Citrus clementina; type=EST; length=690bp
GAAACTCAATTGTCTCGCTCTCTCTAAATTACATCTCACTCTCTCGCACT
TTCTCTTAATTTCCGGTAAAATATTTTTAGACCGCTCATGAGGGCGCCGA
AGAGGCCGATCCACGCGGTTTCGACATGGGTCCGGCGACAGCCGCCGAAA
GTGAAGGCATTTTTGGCGGTGGTCTCCGGCATGGCAGCGCTGGCTTTGCT
CCGATTCATTGTACACGACCACGATAACCTCTTCGTTGCTGCCGAGGCCG
TGCACTCCATTGGAATCTCCGTGTTAATATACAAGCTCATGAAAGAGAAA
ACTTGTGCTGGACTGTCACTCAAATCCCAGGAACTAACAGCTATTTTCTT
AGCTGTGAGGCTATACTGTAGTTTTGTGATGGAATATGCTATACACACCC
TACTGGATTTAGCTACTTTGGCTACGACCCTTTGGGTTATTTATATGATC
CGTTTCAATCTAAGGTCTAGTTACATGGAGGACAAGGACAACTTTGCAAT
ATATTATGTGGTGGTACCCTGTGCAGTATTGGCTCTGTTAATTCATCCAT
CGACTTCGCATAATATATTGAATAGGATTTTCTGGGCTTTCTGTGTTTAT
CTGGAAGCTGTTTCAGTACTGCCCCAGTTGCGGGTGATGCAGAACACAAA
GATTGTTGAACCATTCACAGCCCATTATGTATTTGCGCTT
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