FC875524

Overview
NameFC875524
Unique NameFC875524
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5082 contig Ccv1_Contig5082:50..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD22_RAT (ER lumen protein retaining receptor 2 OS=Rattus norvegicus GN=Kdelr2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 50/159 (31.45%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ SF+  Y  +              +Y+I    +++Y  + D F + ++VVP   L+ L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLY--NTSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD22_MOUSE (ER lumen protein retaining receptor 2 OS=Mus musculus GN=Kdelr2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 50/159 (31.45%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ SF+  Y  +              +Y+I    +++Y  + D F + ++VVP   L+ L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLY--NTSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD22_HUMAN (ER lumen protein retaining receptor 2 OS=Homo sapiens GN=KDELR2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 50/159 (31.45%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ SF+  Y  +              +Y+I    +++Y  + D F + ++VVP   L+ L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLY--NTSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD22_CHICK (ER lumen protein retaining receptor 2 OS=Gallus gallus GN=KDELR2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 49/159 (30.82%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ SF+  Y  +              +Y+I    +++Y  + D F + +++VP   L+ L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NIFRLTGDLSHLAAIIILLLKIWKSRSCAGISGKSQLLFALVFTTRYLDLFTSFISLY--NTSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLIVPVGGLSFLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD22_BOVIN (ER lumen protein retaining receptor 2 OS=Bos taurus GN=KDELR2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 50/159 (31.45%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ SF+  Y  +              +Y+I    +++Y  + D F + ++VVP   L+ L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLY--NTSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD22_DANRE (ER lumen protein retaining receptor 2 OS=Danio rerio GN=kdelr2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 52/159 (32.70%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L  SF+  Y  +              +Y+I    R++Y  + D F   ++VVP   LA L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NIFRLTGDLSHLAAIIILLLKIWKSRSCAGISGKSQILFALVFTTRYLDLLTSFISLY--NTCMKVIYIGCAYATVYLIYAKFRATYDGNHDTFRAEFLVVPVGGLAFLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFCL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD22_XENTR (ER lumen protein retaining receptor 2 OS=Xenopus tropicalis GN=kdelr2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F ++ +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L  SF+  Y  +              +Y+I    +++Y  + D F + ++VVP   L++L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NVFRLSGDLSHLAAIIILLLKIWKSRSCAGISGKSQLLFALVFTTRYLDLLTSFISLY--NTSMKVIYIGCAYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSVLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD23_XENTR (ER lumen protein retaining receptor 3 OS=Xenopus tropicalis GN=kdelr3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 48/157 (30.57%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F ++ +  H + I +L+ K+ K K+CAG+S KSQ L A+    R    F +  + +            +V +Y+I    R +Y  + D F + +++VP   L+ L +   +      I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NVFRISGDVSHLLAIIILLLKMWKSKSCAGISGKSQLLFALVFTTRYLDLFTVFISAYNTVMKIVFLVCAYVTVYLIYGKFRKAYDSENDTFRLEFLLVPVIGLSFLENYEFTPL---EILWTFSIYLESVAILPQLFMISKTGEAESITTHYLFFL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD23_MOUSE (ER lumen protein retaining receptor 3 OS=Mus musculus GN=Kdelr3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 47/157 (29.94%), Postives = 83/157 (52.87%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  +  H + + +L+ K+ + K+CAG+S KSQ L A+    R    F    +I+            +V +YMI +  R ++  + D F + +++VP   L+ L++ S +      + W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NVFRILGDLSHLLAMILLLVKIWRSKSCAGISGKSQILFALVFTTRYLDLFSNFISIYNTVMKVVFLLCAYVTVYMIYWKFRKTFDIENDTFRLEFLLVPVTGLSFLVNYSYTPM---EVLWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD22_XENLA (ER lumen protein retaining receptor 2 OS=Xenopus laevis GN=kdelr2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 49/159 (30.82%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F ++ +  H   I +L+ K+   ++CAG+S KSQ L A+    R   L+ SF+  Y  +              +Y+I    +++Y  + D F + ++VVP   L++L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NVFRLSGDLCHLAAIIILLLKIWNSRSCAGISGKSQLLFAMVFTTRYLDLFTSFISLY--NTSMKVIYMGCAYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSVLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFL 155          
The following BLAST results are available for this feature:
BLAST of FC875524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ERD22_RAT1.228e-1431.45ER lumen protein retaining receptor 2 OS=Rattus no... [more]
ERD22_MOUSE1.228e-1431.45ER lumen protein retaining receptor 2 OS=Mus muscu... [more]
ERD22_HUMAN1.228e-1431.45ER lumen protein retaining receptor 2 OS=Homo sapi... [more]
ERD22_CHICK1.228e-1430.82ER lumen protein retaining receptor 2 OS=Gallus ga... [more]
ERD22_BOVIN1.228e-1431.45ER lumen protein retaining receptor 2 OS=Bos tauru... [more]
ERD22_DANRE1.603e-1432.70ER lumen protein retaining receptor 2 OS=Danio rer... [more]
ERD22_XENTR2.094e-1431.45ER lumen protein retaining receptor 2 OS=Xenopus t... [more]
ERD23_XENTR2.735e-1430.57ER lumen protein retaining receptor 3 OS=Xenopus t... [more]
ERD23_MOUSE2.735e-1429.94ER lumen protein retaining receptor 3 OS=Mus muscu... [more]
ERD22_XENLA2.735e-1430.82ER lumen protein retaining receptor 2 OS=Xenopus l... [more]

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Properties
Property NameValue
Genbank descriptionC31404H05EF CTVClemen1 Citrus clementina cDNA clone C31404H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875524 ID=FC875524; Name=FC875524; organism=Citrus clementina; type=EST; length=690bp
GAAACTCAATTGTCTCGCTCTCTCTAAATTACATCTCACTCTCTCGCACT
TTCTCTTAATTTCCGGTAAAATATTTTTAGACCGCTCATGAGGGCGCCGA
AGAGGCCGATCCACGCGGTTTCGACATGGGTCCGGCGACAGCCGCCGAAA
GTGAAGGCATTTTTGGCGGTGGTCTCCGGCATGGCAGCGCTGGCTTTGCT
CCGATTCATTGTACACGACCACGATAACCTCTTCGTTGCTGCCGAGGCCG
TGCACTCCATTGGAATCTCCGTGTTAATATACAAGCTCATGAAAGAGAAA
ACTTGTGCTGGACTGTCACTCAAATCCCAGGAACTAACAGCTATTTTCTT
AGCTGTGAGGCTATACTGTAGTTTTGTGATGGAATATGCTATACACACCC
TACTGGATTTAGCTACTTTGGCTACGACCCTTTGGGTTATTTATATGATC
CGTTTCAATCTAAGGTCTAGTTACATGGAGGACAAGGACAACTTTGCAAT
ATATTATGTGGTGGTACCCTGTGCAGTATTGGCTCTGTTAATTCATCCAT
CGACTTCGCATAATATATTGAATAGGATTTTCTGGGCTTTCTGTGTTTAT
CTGGAAGCTGTTTCAGTACTGCCCCAGTTGCGGGTGATGCAGAACACAAA
GATTGTTGAACCATTCACAGCCCATTATGTATTTGCGCTT
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