FC875524

Overview
NameFC875524
Unique NameFC875524
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5082 contig Ccv1_Contig5082:50..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD23_HUMAN (ER lumen protein retaining receptor 3 OS=Homo sapiens GN=KDELR3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +  +  H + + +L+ K+ + K C G+S KSQ L A+    R    F    +I+            +V +YMI    R ++  + D F + +++VP   L+ L + S +   L  I W F +YLE+V++LPQL ++  T   E  T HY+F L
Sbjct:    2 NVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYNTVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFT---LLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFL 155
The following BLAST results are available for this feature:
BLAST of FC875524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ERD23_HUMAN3.024e-1330.57ER lumen protein retaining receptor 3 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC31404H05EF CTVClemen1 Citrus clementina cDNA clone C31404H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875524 ID=FC875524; Name=FC875524; organism=Citrus clementina; type=EST; length=690bp
GAAACTCAATTGTCTCGCTCTCTCTAAATTACATCTCACTCTCTCGCACT
TTCTCTTAATTTCCGGTAAAATATTTTTAGACCGCTCATGAGGGCGCCGA
AGAGGCCGATCCACGCGGTTTCGACATGGGTCCGGCGACAGCCGCCGAAA
GTGAAGGCATTTTTGGCGGTGGTCTCCGGCATGGCAGCGCTGGCTTTGCT
CCGATTCATTGTACACGACCACGATAACCTCTTCGTTGCTGCCGAGGCCG
TGCACTCCATTGGAATCTCCGTGTTAATATACAAGCTCATGAAAGAGAAA
ACTTGTGCTGGACTGTCACTCAAATCCCAGGAACTAACAGCTATTTTCTT
AGCTGTGAGGCTATACTGTAGTTTTGTGATGGAATATGCTATACACACCC
TACTGGATTTAGCTACTTTGGCTACGACCCTTTGGGTTATTTATATGATC
CGTTTCAATCTAAGGTCTAGTTACATGGAGGACAAGGACAACTTTGCAAT
ATATTATGTGGTGGTACCCTGTGCAGTATTGGCTCTGTTAATTCATCCAT
CGACTTCGCATAATATATTGAATAGGATTTTCTGGGCTTTCTGTGTTTAT
CTGGAAGCTGTTTCAGTACTGCCCCAGTTGCGGGTGATGCAGAACACAAA
GATTGTTGAACCATTCACAGCCCATTATGTATTTGCGCTT
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