FC875529

Overview
NameFC875529
Unique NameFC875529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11919 contig Ccv1_Contig11919:332..1006. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875529 vs. ExPASy Swiss-Prot
Match: DFRA_SYNY3 (Putative dihydroflavonol-4-reductase OS=Synechocystis sp. (strain PCC 6803) GN=dfrA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 60/186 (32.26%), Postives = 101/186 (54.30%), Query Frame = 2 
Query:   71 VTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTDASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGPF 628
            VTG  GF+G  +VR LLE+GY  + A +   +   +L +LP         +    L++  + + ++GC+G+FH+A+  +L   KD E  L    V GT N+L  A+K G+ R V TSS+++I    +   G+  DE+  + ++        Y  SK  AE+ A   A++ G D+V ++P+T +GP+
Sbjct:   15 VTGGTGFVGANLVRHLLEQGY-QVRALVRASSRPDNLQNLPID-------WVVGDLNDGDLHQQMQGCQGLFHVAAHYSLWQ-KDREA-LYRSNVLGTRNILACAQKAGIERTVYTSSVAAIGVKGD---GQRADESYQSPVEKLIGA---YKQSKYWAEQEALTAAQQ-GQDIVIVNPSTPIGPW 183
The following BLAST results are available for this feature:
BLAST of FC875529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
DFRA_SYNY34.894e-1332.26Putative dihydroflavonol-4-reductase OS=Synechocys... [more]

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Properties
Property NameValue
Genbank descriptionC31404H10EF CTVClemen1 Citrus clementina cDNA clone C31404H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875529 ID=FC875529; Name=FC875529; organism=Citrus clementina; type=EST; length=675bp
GACACTTCACAAAATCGTCACATAATTAAAGAGAAAAAGGATGAACGGGC
CAGAAAAGGAAGTAGTTTGCGTGACTGGAGCCAACGGGTTCATCGGAACA
TGGGTGGTCCGAACCCTTCTAGAAAAAGGCTACACCAACATTCACGCTGC
CATCTTTCCCGGCACTGACGCATCCCACTTGTTCAGCCTCCCAGGCGCCA
CCAAGCTCAACGTCCGTGTTTACGAGGCCAATATCTTAGACAACGAAGCA
ATTTCCAGGGCCATCGAGGGTTGCAAGGGGGTCTTCCATCTTGCCTCTCC
TAACACCCTGGATGATCCCAAGGACCCCGAAAAGGAGCTGCTCATTCCTG
CTGTTCAAGGCACCCTCAATGTCTTAGAGGCTGCCAAGAAGTTTGGTGTC
AGGCGTGTGGTGCTCACCAGCTCCATTTCTTCCATTGTGCCTAATCCCAA
TTGGCCTCAAGGCAAGGTCATTGATGAAACTTCTTGGACCGACCTTGACT
TTTGCAAGTCTCACAAGATATGGTATTCAATGTCAAAGACACTAGCAGAA
AAAGCAGCATGGGAATTTGCAGAGAAGAATGGAACGGATGTGGTGGCAAT
CCATCCAGCCACATCTCTTGGGCCATTTCCGCAGCCTTACGTGAACGCGA
GCGGAGCTGTGCTGCAGCGTTTGTT
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