FC875533

Overview
NameFC875533
Unique NameFC875533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38
Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I EV+  NL  E ++IR +I +Y  ++MDTEFPGVV RP    R  +    Y  L+ NVDLL +IQ+GLT  +E+G  P   S      W+FNFK F++    +A DS+ELL   GI F+K+ E GI++  FAELLM+SG+VL + V W++FHS YDFGYL+K LT   LPE+  +F   + +FF
Sbjct:   12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38
Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I EV+  NL  E ++IR +I +Y  ++MDTEFPGVV RP    R  +    Y  L+ NVDLL +IQ+GLT  +E+G  P   S      W+FNFK F++    +A DS+ELL   GI F+K+ E GI++  FAELLM+SG+VL + V W++FHS YDFGYL+K LT   LPE+  +F   + +FF
Sbjct:   12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38
Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I EV+  NL  E ++IR +I +Y  ++MDTEFPGVV RP    R  +    Y  L+ NVDLL +IQ+GLT  +E+G  P   S      W+FNFK F++    +A DS+ELL   GI F+K+ E GI++  FAELLM+SG+VL + V W++FHS YDFGYL+K LT   LPE+  +F   + +FF
Sbjct:   12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.272e-37
Identity = 86/185 (46.49%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I EV+  NL  + +RIR +I +Y  ++MDTEFPGVV RP    R  +    Y  L+ NVDLL +IQ+GLT  +E+G  P   S      W+FNFK F++    +A DS+ELL   GI F+K+ E GI++  FAEL M+SG+VL + V W++FHS YDFGYL+K LT   LPE   +F   + +FF
Sbjct:   12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFF 189          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.288e-37
Identity = 86/185 (46.49%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I EV+  NL  + +RIR +I +Y  ++MDTEFPGVV RP    R  +    Y  L+ NVDLL +IQ+GLT  +E+G  P   S      W+FNFK F++    +A DS+ELL   GI F+K+ E GI++  FAEL M+SG+VL + V W++FHS YDFGYL+K LT   LPE   +F   + +FF
Sbjct:   12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFF 189          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.288e-37
Identity = 85/185 (45.95%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I EV+  NL  E +RIR +  ++  I+MDTEFPGVV RP    R  +    Y  L+ NVDLL +IQ+GLT  +E+G  P   S      W+FNFK F++    +A DS+ELL   GI F+K+ E GI+++ FAELLM+SG+VL + V W++FHS YDFGYL+K L+   LP++  +F   + +FF
Sbjct:   12 ICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFF 189          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.724e-36
Identity = 76/179 (42.46%), Postives = 115/179 (64.25%), Query Frame = 1
Query:  166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEF 702
            + +R+V++ NL SEF  IR L+ +Y  +S+ TEF G + RP    R +    +Y  ++ANVD LN IQ+GL+LSD  GN PD G  +    W+FNF +FD  +   + +S+ELL++ GI+FEK+   GID   F++LLM SGL+++  VTW+T+H+AYD G+L+  L    +P    +F
Sbjct:  158 LFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDY-HYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPST----WQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDF 330          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.889e-33
Identity = 74/179 (41.34%), Postives = 110/179 (61.45%), Query Frame = 1
Query:  166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEF 702
            + I  V+  N+  EF RIR  ++ YP ++MDTEFPGVV  P    R ++   NY  +  NV++L LIQ+G  + +++G LP  G      +W+FNF +F  A    + +SVE+L++ GIDF   +  GI +  F ELL +SGL+ +  +TW+TF S YDFGYL+K +T   LP++ S F
Sbjct:   21 VKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDF-NYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGD-----VWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTF 192          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 60/185 (32.43%), Postives = 92/185 (49.73%), Query Frame = 1
Query:  169 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAAN--YNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAEL-LMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRV 714
            L R V+  N+  E  R+   + R+P+I+ DTE+PG++ R      + D +++  Y  +K NV+   LIQ G TL + +G +          +WE NF +F          S+E L+R G+D +K R+ G+D   +     + +     K V +VTF  AYDF Y +  L    LPE   EF T V
Sbjct:    8 LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFR-----TYFDSSSDECYRAMKGNVENTKLIQCGFTLFNAKGEIGG--------VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEV 179          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 66/182 (36.26%), Postives = 91/182 (50.00%), Query Frame = 1
Query:  178 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVV----VRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKD---VTWVTFHSAYDFGYLVKCLTQRVLPEKLSEF 702
            EV+ +N  +E   IR  +     I++DTEFPG +    +     IR+RD       +K NVD  +LIQ+GLTL          G G T   WE N  DF+ ++      S+  LK  G+D +K RE GI      E  M    +LN+    + WVTF  +YD  YL+K LT++ LPE   EF
Sbjct:    4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRD-------MKFNVDNTHLIQLGLTL---------FGKGITK-TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEF 165          
The following BLAST results are available for this feature:
BLAST of FC875533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CNOT7_HUMAN8.610e-3847.03CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK8.610e-3847.03CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]
CNOT7_BOVIN8.610e-3847.03CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CNOT7_XENLA3.272e-3746.49CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_XENTR7.288e-3746.49CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_DANRE7.288e-3745.95CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
POP2_YEAST4.724e-3642.46Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CNOT7_CAEEL4.889e-3341.34CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
CAF1A_ARATH8.096e-2032.43Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1E_ARATH3.401e-1836.26Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC31405A02EF CTVClemen1 Citrus clementina cDNA clone C31405A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875533 ID=FC875533; Name=FC875533; organism=Citrus clementina; type=EST; length=728bp
GGAATTTCCTCTAACTCGAGACCAAACCCTAGAAATTATTAAAAAAAAAA
ATCTAAAAAAAAAATAAAATTAAAGCCTTTTCAAGAATTGAATCAATTGG
ATCAGGATCCGACAAGATTTCTTGCCATGTCAGACGTACCGCCGCCGCAG
CCTCCGAAGCCTCGGATCTTGATCCGAGAGGTATTTGAGTTTAACTTGAT
CTCCGAGTTCGAAAGGATCAGAGCTTTAATTGACAGATATCCGATAATCT
CAATGGACACGGAGTTCCCTGGCGTCGTGGTCCGACCCGATTCGAACATC
CGTCACCGTGACCCGGCTGCGAATTACAATGGACTCAAGGCAAATGTGGA
TCTGTTAAATCTGATCCAAATAGGTTTAACCTTATCGGACGAGGAAGGGA
ATCTTCCGGACCTCGGGTCGGGTTCTACGTATTATATTTGGGAGTTCAAT
TTTAAGGACTTCGATATCGCGCGTCACGCCCACGCTCTCGATTCGGTTGA
GCTGTTGAAACGACAAGGTATTGATTTTGAAAAGAATCGTGAATTTGGAA
TCGACTCGGTAAGATTTGCTGAATTGTTGATGTCGTCAGGGCTTGTATTA
AACAAGGACGTTACATGGGTGACCTTCCACAGCGCCTATGATTTCGGGTA
TTTGGTTAAATGCTTGACACAGCGGGTCTTGCCTGAGAAATTGAGTGAGT
TTGTGACTCGAGTGGGCGTGTTTTTTGG
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