FC875533
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3) HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38 Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 1 Query: 172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+K+ E GI++ FAELLM+SG+VL + V W++FHS YDFGYL+K LT LPE+ +F + +FF Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38 Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 1 Query: 172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+K+ E GI++ FAELLM+SG+VL + V W++FHS YDFGYL+K LT LPE+ +F + +FF Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38 Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 1 Query: 172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+K+ E GI++ FAELLM+SG+VL + V W++FHS YDFGYL+K LT LPE+ +F + +FF Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.272e-37 Identity = 86/185 (46.49%), Postives = 117/185 (63.24%), Query Frame = 1 Query: 172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I EV+ NL + +RIR +I +Y ++MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+K+ E GI++ FAEL M+SG+VL + V W++FHS YDFGYL+K LT LPE +F + +FF Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFF 189
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 7.288e-37 Identity = 86/185 (46.49%), Postives = 117/185 (63.24%), Query Frame = 1 Query: 172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I EV+ NL + +RIR +I +Y ++MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+K+ E GI++ FAEL M+SG+VL + V W++FHS YDFGYL+K LT LPE +F + +FF Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFF 189
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 7.288e-37 Identity = 85/185 (45.95%), Postives = 119/185 (64.32%), Query Frame = 1 Query: 172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I EV+ NL E +RIR + ++ I+MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+K+ E GI+++ FAELLM+SG+VL + V W++FHS YDFGYL+K L+ LP++ +F + +FF Sbjct: 12 ICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFF 189
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2) HSP 1 Score: 151.369 bits (381), Expect = 4.724e-36 Identity = 76/179 (42.46%), Postives = 115/179 (64.25%), Query Frame = 1 Query: 166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEF 702 + +R+V++ NL SEF IR L+ +Y +S+ TEF G + RP R + +Y ++ANVD LN IQ+GL+LSD GN PD G + W+FNF +FD + + +S+ELL++ GI+FEK+ GID F++LLM SGL+++ VTW+T+H+AYD G+L+ L +P +F Sbjct: 158 LFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDY-HYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPST----WQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDF 330
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.889e-33 Identity = 74/179 (41.34%), Postives = 110/179 (61.45%), Query Frame = 1 Query: 166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEF 702 + I V+ N+ EF RIR ++ YP ++MDTEFPGVV P R ++ NY + NV++L LIQ+G + +++G LP G +W+FNF +F A + +SVE+L++ GIDF + GI + F ELL +SGL+ + +TW+TF S YDFGYL+K +T LP++ S F Sbjct: 21 VKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDF-NYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGD-----VWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTF 192
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20 Identity = 60/185 (32.43%), Postives = 92/185 (49.73%), Query Frame = 1 Query: 169 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAAN--YNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAEL-LMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRV 714 L R V+ N+ E R+ + R+P+I+ DTE+PG++ R + D +++ Y +K NV+ LIQ G TL + +G + +WE NF +F S+E L+R G+D +K R+ G+D + + + K V +VTF AYDF Y + L LPE EF T V Sbjct: 8 LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFR-----TYFDSSSDECYRAMKGNVENTKLIQCGFTLFNAKGEIGG--------VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEV 179
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18 Identity = 66/182 (36.26%), Postives = 91/182 (50.00%), Query Frame = 1 Query: 178 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVV----VRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKD---VTWVTFHSAYDFGYLVKCLTQRVLPEKLSEF 702 EV+ +N +E IR + I++DTEFPG + + IR+RD +K NVD +LIQ+GLTL G G T WE N DF+ ++ S+ LK G+D +K RE GI E M +LN+ + WVTF +YD YL+K LT++ LPE EF Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRD-------MKFNVDNTHLIQLGLTL---------FGKGITK-TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEF 165 The following BLAST results are available for this feature:
BLAST of FC875533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875533 ID=FC875533; Name=FC875533; organism=Citrus clementina; type=EST; length=728bpback to top |