FC875533

Overview
NameFC875533
Unique NameFC875533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 60/162 (37.04%), Postives = 80/162 (49.38%), Query Frame = 1
Query:  238 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLP---EKLSEFVTRV 714
            Y  I++DTEFP  +       +H      Y  +  +VD   LIQ+GLTL D  G +     G T   WE NF DF +   A    S+E L+R G+D  K RE GI    F   +        +++TWVTFH +YD  YL+K  T   LP   E+ S+ V RV
Sbjct:   11 YRFIAIDTEFPSTL---RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI-----GGT---WEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARV 160          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 65/182 (35.71%), Postives = 86/182 (47.25%), Query Frame = 1
Query:  178 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVV----VRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKD--VTWVTFHSAYDFGYLVKCLT-QRVLPEKLSEF 702
            EV+ +N   E   IR  +     I++DTEFPG +    +     IR+RD       +K NVD  +LIQ+G TL D  G             WE N  DFD  +      S+  LK  G++ +K RE GI    F      S ++  KD  +TWV F  +YD  YLVK LT  + LPE   EF
Sbjct:    8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRD-------MKFNVDNTHLIQLGFTLFDRRGFAKT---------WEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDF--SQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEF 171          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 63/182 (34.62%), Postives = 87/182 (47.80%), Query Frame = 1
Query:  178 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVV----VRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKD--VTWVTFHSAYDFGYLVKCLT-QRVLPEKLSEF 702
            EV+ +N   E + IR  +  +  I++DTEFPG +    +     IR+RD       +K NVD  +LIQ+G TL D  G             WE N  DF+  +      S+  LK  G++ +K  E GI    F      S ++  KD  +TWV F  +YD  YLVK LT  + LPE   EF
Sbjct:    3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRD-------MKFNVDNTHLIQLGFTLFDRRGITKT---------WEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDF--SQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEF 166          
The following BLAST results are available for this feature:
BLAST of FC875533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1H_ARATH9.896e-1837.04Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1C_ARATH2.064e-1535.71Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1D_ARATH7.841e-1534.62Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC31405A02EF CTVClemen1 Citrus clementina cDNA clone C31405A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875533 ID=FC875533; Name=FC875533; organism=Citrus clementina; type=EST; length=728bp
GGAATTTCCTCTAACTCGAGACCAAACCCTAGAAATTATTAAAAAAAAAA
ATCTAAAAAAAAAATAAAATTAAAGCCTTTTCAAGAATTGAATCAATTGG
ATCAGGATCCGACAAGATTTCTTGCCATGTCAGACGTACCGCCGCCGCAG
CCTCCGAAGCCTCGGATCTTGATCCGAGAGGTATTTGAGTTTAACTTGAT
CTCCGAGTTCGAAAGGATCAGAGCTTTAATTGACAGATATCCGATAATCT
CAATGGACACGGAGTTCCCTGGCGTCGTGGTCCGACCCGATTCGAACATC
CGTCACCGTGACCCGGCTGCGAATTACAATGGACTCAAGGCAAATGTGGA
TCTGTTAAATCTGATCCAAATAGGTTTAACCTTATCGGACGAGGAAGGGA
ATCTTCCGGACCTCGGGTCGGGTTCTACGTATTATATTTGGGAGTTCAAT
TTTAAGGACTTCGATATCGCGCGTCACGCCCACGCTCTCGATTCGGTTGA
GCTGTTGAAACGACAAGGTATTGATTTTGAAAAGAATCGTGAATTTGGAA
TCGACTCGGTAAGATTTGCTGAATTGTTGATGTCGTCAGGGCTTGTATTA
AACAAGGACGTTACATGGGTGACCTTCCACAGCGCCTATGATTTCGGGTA
TTTGGTTAAATGCTTGACACAGCGGGTCTTGCCTGAGAAATTGAGTGAGT
TTGTGACTCGAGTGGGCGTGTTTTTTGG
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