FC875537

Overview
NameFC875537
Unique NameFC875537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15531 contig Ccv1_Contig15531:202..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875537 vs. ExPASy Swiss-Prot
Match: 6PGL_CHLTR (6-phosphogluconolactonase OS=Chlamydia trachomatis GN=pgl PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 59/214 (27.57%), Postives = 94/214 (43.93%), Query Frame = 3
Query:   27 NKNKNVQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSVQF 668
            N    + + DS+E+            + K   ++G+F V LSGG     + + +        + +K  VFW DER        SNY  A D  L  + I    ++ + D    +G  E YE  ++      I           FD+++LG+G DGH  SLFP    L+E E++V F  + P+    R+T TFP++  + ++   V G  K   F
Sbjct:    8 NDANRMLIADSQEEFLQIACYDWISTANKAIHKRGAFYVALSGGKTPLQIFQEIVKKRAAISDCSKIVVFWGDERANEDVEAGSNYLKAMD-ILKGLRIPEDQIFRM-DTADPKGD-EAYEALIQKYVPDAI-----------FDMVMLGVGEDGHTLSLFPETHALEEKERFVVF-NEVPQLHTRRMTLTFPIVRQARHLVAYVQGENKQDLF 206          
BLAST of FC875537 vs. ExPASy Swiss-Prot
Match: 6PGL_HAEIN (6-phosphogluconolactonase OS=Haemophilus influenzae GN=pgl PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 52/174 (29.89%), Postives = 78/174 (44.83%), Query Frame = 3
Query:  141 VVLSGGSLIDSLRK-LVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKS 659
            + LSGGS    L K L + PY + I W   H +W D+R+VP    +SNY          + I   N++ I          + +E  L  +  + +           FD ++LGMG DGH ASLFP H    ++E  +  I   P+    RI+ T  +I  +  I  +V G  K+
Sbjct:   32 ISLSGGSTPKLLFKTLAKSPYAEQINWKNLHFWWGDDRMVPPSDPESNYGEVQKLLFDHIQIPAENIHRIRGENEPHFELKRFEEELSAVIPNGV-----------FDWIILGMGIDGHTASLFP-HQTNFDDEN-LAVIAKHPESGQIRISKTAKLIEQAKRITYLVTGESKA 192          
BLAST of FC875537 vs. ExPASy Swiss-Prot
Match: 6PGL_CHLPN (6-phosphogluconolactonase OS=Chlamydia pneumoniae GN=pgl PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 54/179 (30.17%), Postives = 85/179 (47.49%), Query Frame = 3
Query:  120 KEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGK 656
            K++G+F V LSGG     + K +       I+ +K  +FW DER+ P    +SNY  A    L  + I    ++ + +  + +GA +  E     L ++ I   S       FD+++LG+G DGH  SLF     L+E    V F    P    ER+T TFP ++   ++ + V G  K
Sbjct:   39 KQRGAFYVALSGGKTPLEIYKDIVINKDKLIDPSKIFLFWGDERLAPITSSESNYGQAMS-ILRDLNIPDEQIFRM-ETENPDGAKKYQE-----LIENKIPDAS-------FDMIMLGLGEDGHTLSLFSNTSALEEENDLVVF-NSVPHLETERMTLTFPCVHKGKHVVVYVQGENK 202          
BLAST of FC875537 vs. ExPASy Swiss-Prot
Match: 6PGL_AGGAC (6-phosphogluconolactonase OS=Aggregatibacter actinomycetemcomitans GN=pgl PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 50/174 (28.74%), Postives = 77/174 (44.25%), Query Frame = 3
Query:  141 VVLSGGSLIDSLRK-LVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKS 659
            + LSGGS    L K L + PY + I W   H +W D+R+V     +SNY          + I   N++ I          + ++  L  +    +           FD ++LGMG DGH +SLFP H    ++E  +  I   P+    RI+ T  +I  +  I  +V G GK+
Sbjct:   32 ISLSGGSTPKLLFKTLAQSPYAEQINWRNLHFWWGDDRMVSPSDPESNYGEVQKLLFDHIQIPAENIHRIRGENEPHFELKRFQAELSAVISDGV-----------FDWIILGMGADGHTSSLFP-HQTNFDDEN-LAVIAKHPESGQIRISKTAKLIEQAKRITYLVTGEGKA 192          
The following BLAST results are available for this feature:
BLAST of FC875537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
6PGL_CHLTR4.683e-1227.576-phosphogluconolactonase OS=Chlamydia trachomatis... [more]
6PGL_HAEIN7.988e-1229.896-phosphogluconolactonase OS=Haemophilus influenza... [more]
6PGL_CHLPN2.324e-1130.176-phosphogluconolactonase OS=Chlamydia pneumoniae ... [more]
6PGL_AGGAC2.324e-1128.746-phosphogluconolactonase OS=Aggregatibacter actin... [more]

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Properties
Property NameValue
Genbank descriptionC31405A06EF CTVClemen1 Citrus clementina cDNA clone C31405A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875537 ID=FC875537; Name=FC875537; organism=Citrus clementina; type=EST; length=724bp
CATCATCAATGGCTGCCGAGAATAAGAACAAGAACAAGAACGTACAAGTT
TTTGACTCAGAGGAAGATCTGGCTGTGTCTTTGGCCAAATACACCGCCGA
TCTATCTGCCAAGTTCGGTAAAGAGAAGGGCTCCTTCACTGTCGTCTTAT
CCGGTGGTTCTCTCATCGACTCCCTCAGGAAATTAGTGGAACCCCCGTAT
GTAGATTCAATTGAATGGGCGAAATGGCATGTGTTTTGGGTTGATGAAAG
AGTTGTTCCCAAGGATCATGATGATAGCAATTATAAGCTTGCTTATGATG
GTTTCCTTTCTCAGGTACCAATTACCACTGGCAATGTCTATGCCATCAAT
GATGCATTATCTGCTGAAGGTGCAGCTGAAGATTACGAGACTTGTCTCAA
GCATTTGACAAAGAGCAATATATTAGCTACATCTGCTGCTACTGGTTTTC
CAAAGTTTGATCTCATGCTTCTGGGTATGGGTCCAGATGGACATATAGCT
TCTCTGTTTCCAGGGCATCCTCTTCTCAAGGAGAATGAGAAATGGGTTAC
TTTCATTAAAGACTCGCCAAAGCCACCTCCAGAGAGAATCACTTTCACCT
TCCCTGTAATCAACTCATCTGCATATATTGCAATGGTGGTGTGTGGTGCT
GGAAAATCAGTGCAGTTCAAACTGCATTGGGTAATATCAAAACTCTGATT
TGCTGCCAGTTCAATGGCATTGGC
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