FC875540

Overview
NameFC875540
Unique NameFC875540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10255 contig Ccv1_Contig10255:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5_SCHPO (Probable eukaryotic translation initiation factor 5 OS=Schizosaccharomyces pombe GN=SPAC2F7.05c PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  476 DAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            D+FYRY+MPK+ +KIEG+GNGIKT + NM DIAKAL RPP Y TK+FG ELGAQ+         +V+GAHD  K
Sbjct:   12 DSFYRYRMPKLQSKIEGKGNGIKTVIPNMSDIAKALGRPPLYVTKFFGFELGAQTTIIADMDRYIVNGAHDAGK 85
[Close]
BLAST of FC875540 vs. ExPASy Swiss-Prot
Match: IF5_YEAST (Eukaryotic translation initiation factor 5 OS=Saccharomyces cerevisiae GN=TIF5 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 2 
Query:  467 NSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVHGAHDTAK 697
            ++ D FYRYKMP +  K+EGRGNGIKT V+N+ DI+ AL RP  Y  KYFG ELGAQ+         LV+G H+ AK
Sbjct:    8 DNHDPFYRYKMPPIQAKVEGRGNGIKTAVLNVADISHALNRPAPYIVKYFGFELGAQTSISVDKDRYLVNGVHEPAK 84
The following BLAST results are available for this feature:
BLAST of FC875540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
IF5_SCHPO3.751e-1960.81Probable eukaryotic translation initiation factor ... [more]
IF5_YEAST1.022e-1654.55Eukaryotic translation initiation factor 5 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC31405A09EF CTVClemen1 Citrus clementina cDNA clone C31405A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875540 ID=FC875540; Name=FC875540; organism=Citrus clementina; type=EST; length=699bp
GCTCGCATTATCCTCTCTTCGCACCGCATCGCATCGTATCTAAATCGGAG
CTTCGTCTTCAATCTCTCTGTGTTTATATCATCATCTTATCATCTCAGAG
GAAGTTGGCAGTTTAGTCTGCTGAGTTGCAGTCACAAAGTGGAGAGTGTT
AAGTCTGAAGCTTTTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATC
AATTGGTTTGCTTGGAGAGTATTTCCCTACGTCTAGAAAAAAGAGCGGAC
ATTCTTCTCATAAAGTTGGCTGCATGCATCTTGGCGCATCTGAGGCATAT
ACAACACGTATTGATTGCCTGTTTATGCGACCTTTTCCGATTGCAAGGAA
CTTGTCGGTTGAAGGGGGATTTCTTGTTGAAAGAGACAATACTACTGCTT
GTTCATTAGCTTTCTGATTAATCTTACAAATCTATCAAGATGGCCTTGCA
AAACATTGGTGCTTCCAATAGCGATGATGCCTTTTATAGGTATAAGATGC
CGAAGATGATAACTAAGATTGAAGGAAGAGGGAATGGCATCAAAACCAAC
GTGGTTAACATGGTTGATATTGCTAAGGCCTTGGCCAGGCCTCCATCTTA
CACAACAAAATATTTTGGTAATGAGCTGGGAGCCCAGTCTAAATTTGATG
AAAAGACCGGAACCTCTCTTGTNCATGGGGCCCATGACACTGCCAAGCT
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