FC875547

Overview
NameFC875547
Unique NameFC875547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875547_ssr24 microsatellite FC875547_ssr24:24..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3288 contig Ccv1_Contig3288:238..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACCR (ATP synthase subunit delta OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=atpH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 44/141 (31.21%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ +I  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYVKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILPEIADEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACCQ (ATP synthase subunit delta OS=Bacillus cereus (strain Q1) GN=atpH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 44/141 (31.21%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ +I  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYVKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILPEIADEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACC7 (ATP synthase subunit delta OS=Bacillus cereus (strain AH187) GN=atpH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 44/141 (31.21%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ +I  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYVKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILPEIADEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACC4 (ATP synthase subunit delta OS=Bacillus cereus (strain B4264) GN=atpH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 44/141 (31.21%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ +I  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYVKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILPEIADEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACC1 (ATP synthase subunit delta OS=Bacillus cereus (strain ATCC 10987) GN=atpH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 44/141 (31.21%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ +I  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYVKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILPEIADEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACCN (ATP synthase subunit delta OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=atpH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 42/141 (29.79%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ +F + +++H F   P I  E+K+  +  +  S +   L  N L IL+D KR++++  I  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K ++
Sbjct:    6 VAKRYAVALFQIAKEKHVLEMFEEELGLVQSVFMKNEELHSFLTKPNISKEQKKMFLSNVFSSVSESIL--NTLYILVDNKRIEILPAIANEYVTLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNIV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_HELMI (ATP synthase subunit delta OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=atpH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 35/134 (26.12%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  258 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTG 659
            ++  VA  YA AL+++     TL++   ++ +  ++    ++  F  +P+I + +K+++V  +  + A       F+ ++ID +R     DI +EF  + NK+ N E A V+S V+L  E + ++  Q+   TG
Sbjct:    2 LTGAVARRYAQALLEIGIQTKTLDALEGELGRFVEMIGHPELQRFLFHPSIVVAEKKDLVGRLLATGAFSETARAFILLVIDRRRESYFADIFREFVRLANKVRNIEEARVTSAVELAPEQVERLRSQLAAATG 135          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_EMIHU (ATP synthase subunit delta, chloroplastic OS=Emiliania huxleyi GN=atpD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 40/137 (29.20%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQ-IHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRI 677
            +A  YA AL++LA AN++L+ T+ D+  + +  +    + +F  NP I  + K+ ++ ++     +   T  FL +L+D  R+  +  I  +F E+  K  + E+A V+S V+L ++    IA++++K+TGAK +++
Sbjct:    6 IAVPYAEALLELANANSSLKETTNDINIVSQFLANSSDLKKFLGNPLITRDAKKGVLKDVL-GEQIGEKTLTFLMLLVDRGRIAYLDGIAYKFLELSYKEESIEIAKVTSSVQLSAQQQKTIAEKLKKITGAKQIKL 141          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_CYAA5 (ATP synthase subunit delta OS=Cyanothece sp. (strain ATCC 51142) GN=atpH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 43/146 (29.45%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  249 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            G   S  +A  YA AL+ LA++ +   S   D   I  I  E  ++ EF  +P I  E KR +++ +  +     L  NFL +L+D +R+  ++ I +++  +  K+TNT +A V++  +L       +  +++ LTGA++V +KT
Sbjct:    3 GSLFSTEIAEPYAQALMSLAQSRDITRSIGEDCRSILDILEESAELREFISSPIIKDEDKRGVLNRLLGNDIHHYLR-NFLMLLVDKRRIVFLQAICEQYLALLRKLTNTVLAEVTASTELSEGQRRDVIDKIKALTGAESVELKT 147          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_PROM0 (ATP synthase subunit delta OS=Prochlorococcus marinus (strain MIT 9301) GN=atpH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 37/140 (26.43%), Postives = 77/140 (55.00%), Query Frame = 3
Query:  267 TVATSYAIALVDLAKANNTLESTSADVEKI-EKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            +V T YA AL+ +   N+  E   ++V+++ E I +  ++ +   +P ++ + K+++++EI        L  NFL +L D +R+ ++  I+  F E+Y + +N  +A V+S V+L  E    I K++  + G + + + T
Sbjct:    6 SVTTPYAEALLQVVNENSQTEEMVSEVKQLLELINNSPELEKALSSPILETDAKKKIINEIFSKKVNSSLL-NFLKLLADRQRIGILTSILDRFLEIYRENSNIALATVTSAVELTDEQKGLITKKIINIAGTEKLELVT 144          
The following BLAST results are available for this feature:
BLAST of FC875547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ATPD_BACCR9.894e-1231.21ATP synthase subunit delta OS=Bacillus cereus (str... [more]
ATPD_BACCQ9.894e-1231.21ATP synthase subunit delta OS=Bacillus cereus (str... [more]
ATPD_BACC79.894e-1231.21ATP synthase subunit delta OS=Bacillus cereus (str... [more]
ATPD_BACC49.894e-1231.21ATP synthase subunit delta OS=Bacillus cereus (str... [more]
ATPD_BACC19.894e-1231.21ATP synthase subunit delta OS=Bacillus cereus (str... [more]
ATPD_BACCN1.292e-1129.79ATP synthase subunit delta OS=Bacillus cereus subs... [more]
ATPD_HELMI1.688e-1126.12ATP synthase subunit delta OS=Heliobacterium modes... [more]
ATPD_EMIHU1.688e-1129.20ATP synthase subunit delta, chloroplastic OS=Emili... [more]
ATPD_CYAA51.688e-1129.45ATP synthase subunit delta OS=Cyanothece sp. (stra... [more]
ATPD_PROM02.879e-1126.43ATP synthase subunit delta OS=Prochlorococcus mari... [more]

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Properties
Property NameValue
Genbank descriptionC31405B04EF CTVClemen1 Citrus clementina cDNA clone C31405B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875547 ID=FC875547; Name=FC875547; organism=Citrus clementina; type=EST; length=699bp
GAATCAATCCGTTCTTTGATTGACTCTCTCTCTCTCTGGCTCTTTCTCTG
TGTGCAGCAGAAGCAGCAGCCTCAGCCTCAGCCGCTGCCTCAGCATCAGC
ATCGGCGTTCTCATCGCGAAAAATGGTGTCTCTTCAGCAAACCGCAACCC
TCTCACTCCAATCAAACCTCTTCCCCTCCGGCCGCGCGGCCTCTCGAAAC
CCATTATCCGCCACCATCCCCTCCGGCCCACGCCGGCGCGGCGCCCACGG
AATCAGAATGTCAGCCACAGTGGCGACCAGCTACGCCATCGCGCTGGTGG
ACTTGGCGAAAGCGAACAACACCCTCGAGTCCACGAGCGCCGACGTGGAA
AAGATCGAGAAAATCTTCAGCGAGAAACAAATCCATGAGTTCTTCGTGAA
CCCCACCATCGATATCGAGAAGAAAAGAGAGATGGTGGACGAGATATGCA
AGTCGTCGGCGCTGCAGCCGCTGACCGGGAATTTCTTGAACATACTGATC
GACGCGAAGAGGGTGGACGTGGTGAAGGACATAGTGAAGGAGTTCGAGGA
GGTGTATAATAAGATGACGAATACGGAGATGGCGGTGGTGAGCTCGGTGG
TGAAGCTGGAGTCGGAGCATTTGGCTCAGATAGCGAAGCAAGTCCAGAAG
TTGACTGGGGCCAAGAATGTGAGGATAAAGACCGTGATGACCCGAGCTT
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