FC875547

Overview
NameFC875547
Unique NameFC875547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875547_ssr24 microsatellite FC875547_ssr24:24..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3288 contig Ccv1_Contig3288:238..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_CYAP8 (ATP synthase subunit delta OS=Cyanothece sp. (strain PCC 8801) GN=atpH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 40/146 (27.40%), Postives = 77/146 (52.74%), Query Frame = 3
Query:  249 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            G  +S+ +A  YA AL+ +A+A+N  E    D   +  I  E + +    ++P I    K+ ++  +       P   NF+ +L+D +R+  +++I +++  +  K+TNT +A V+S  +L       +  +++ LTGA+ V IKT
Sbjct:    3 GSLISSAIAEPYAQALMSVAQAHNLTEQFGDDCRSLIAILEESRDLQGLILSPVIKETDKKAVLRRMM-GDRTSPYLLNFIMLLVDKRRIIFLEEICQQYLTLLRKLTNTVLAEVTSAKELSDRQCRAVTDKIKDLTGAQGVEIKT 147          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_CYAP4 (ATP synthase subunit delta OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=atpH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 39/143 (27.27%), Postives = 81/143 (56.64%), Query Frame = 3
Query:  258 MSATVATSYAIALVDLAKANNTLESTSADVEKI-EKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            + A +   YA AL+ LA++NN       DV  I + + +  ++ +   NP +  E K+ ++ ++  +  +      FL +L+D +R+ +++ I K+F+ +  K+TNT +A V+SVV+L       + ++V+ +TG++ V ++T
Sbjct:    6 VGAEILEPYAEALMSLAQSNNLTGRFGEDVAFILDLLKTSPELQQVLANPFVKPESKKAILRQLV-APQVHDFVLKFLLLLVDRRRIFLLEPICKQFQALLRKLTNTVLAEVTSVVELTEPQRQAVIEKVKTMTGSQQVELET 147          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_ANAVT (ATP synthase subunit delta OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=atpH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 39/139 (28.06%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            VA  YA AL+ +AK+ +  E    D   +  + +E +Q+  F  NP I  E K+ ++ +I   ++  P   NFL +L+D +R+  +++I++++  +  ++  T +A V+S V L  +    + ++V  LT A+ V + T
Sbjct:   10 VAQPYAQALLSIAKSKSLTEEFGTDARTLLNLLAENQQLRNFIDNPFIAAENKKALIKQILSEAS--PYLRNFLLLLVDKRRIFFLEEILQQYLALLRQLNQTVLAEVTSAVALTEDQQQAVKEKVLALTKARQVELAT 146          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_TRIEI (ATP synthase subunit delta OS=Trichodesmium erythraeum (strain IMS101) GN=atpH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 41/143 (28.67%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  258 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            ++  +   YA AL+ LA++ +  +  + DV  +  I  E  +  +F  NP I  E K+ +V  +     + PL  NFL +LID  R+  ++ I K++  +  ++  T +A V+S V+L       I ++V+ +T A+ V I+T
Sbjct:    4 IAGEIVEPYAAALMSLAQSKDLTDKFAEDVRSLINILDESPEFKQFVGNPVIKQEDKKAVVKRML-GEQVDPLMRNFLMLLIDKGRITFLEQIGKQYLALLRELNQTVLAEVTSTVELNENQKNTIRERVKSMTSAREVEIET 145          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_THEEB (ATP synthase subunit delta OS=Thermosynechococcus elongatus (strain BP-1) GN=atpH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 37/139 (26.62%), Postives = 75/139 (53.96%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVE-KIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            V   YA AL+ LA+ +N ++    D +  +E + S  ++ +F  NP I  E K+ ++ ++     +     NFL +L+D +R++ +  I + +  +  K+ N  +A V+S V+L  +    + ++V+ +TGA +V + T
Sbjct:   10 VVEPYAEALLSLAQTHNLIDQFQQDTQLMVELVASSGELQQFLANPLIKPEAKKNVLRQLTVDK-VHGYFLNFLMLLVDRRRINFLSSICEHYRALVRKLRNVALAEVTSAVELNDDQRRAVVEKVKTMTGAADVELVT 147          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACP2 (ATP synthase subunit delta OS=Bacillus pumilus (strain SAFR-032) GN=atpH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 37/148 (25.00%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  258 MSATVATS-YAIALVDLAKANNTLESTSADVEKIEKIF-SEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVMTR 695
            MS T+ +  YA AL D+  A++ ++ T  ++ +I+K+  +++++++F V+P I  +KK+ ++ E  K  +   L  + + +LID  R ++  ++  EF ++ N+    + A+V SV  L    +  +++   K  G  ++R++ V+ +
Sbjct:    1 MSVTIVSKRYASALFDIVLASSAVDETEKELNEIKKVLKADQELNDFLVHPKITADKKKHLIAEAFKGVSTHVL--HTMYLLIDRGRTNIFSEMTSEFVKLANRTKQIDDAIVYSVKPLSGAEIQSLSEVFAKKAGVTSLRVENVIDK 146          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_ANASP (ATP synthase subunit delta OS=Anabaena sp. (strain PCC 7120) GN=atpH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 39/139 (28.06%), Postives = 75/139 (53.96%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            VA  YA AL+ +AK+ +  E    D   +  + +E +Q+  F  NP I  E K+ ++ +I   ++  P   NFL +L+D +R+  + +I++++  +  ++  T +A V+S V L  +    + ++V  LT A+ V + T
Sbjct:   10 VAQPYAQALLSIAKSKSLTEEFGTDARTLLNLLTENQQLRNFIDNPFIAAENKKALIKQILSEAS--PYLRNFLLLLVDKRRIFFLPEILQQYLALLRQLNQTVLAEVTSAVALTEDQQQAVTEKVLALTKARQVELAT 146          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_PORYE (ATP synthase subunit delta, chloroplastic OS=Porphyra yezoensis GN=atpD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 37/137 (27.01%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRI 677
            +A  YA+AL+DLAK     E  S D++ I+ I ++  ++  F  NP   +E K+E++        +   T +FL IL+D KR+ ++  I  ++ E+  +M +  +A +++ + L  +    + ++++ +T AK V++
Sbjct:   10 IAQPYAVALLDLAKTKKVTEKVSQDIQSIQNILAQSDKLKIFLANPLKTVEAKKEVIIATV-GDQINENTLSFLMILVDRKRIGMLDAIASKYLELAYQMESLTIANINTSIALSPDQETLLTEKIKVMTKAKEVKL 145          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_ACAM1 (ATP synthase subunit delta OS=Acaryochloris marina (strain MBIC 11017) GN=atpH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 40/143 (27.97%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  258 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIF-SEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            +S+T+   YA AL+ +A++NN       DV  +  +  +   + +F VNP    + ++ ++ ++ +S  +Q    NFL +LID +R+  ++ I K ++ +  K+ NT +A V+S V+L  E    I  +V+ ++ A  V ++T
Sbjct:    6 VSSTIVEPYAEALMSVAQSNNLTNQIGEDVSFVLSLLQTSDDLKDFLVNPLTPADAQKAVLRQLAESR-VQKQFFNFLLLLIDRRRIIFLEGICKYYQALLRKLNNTVLAEVTSTVELTDEQRHAITDKVKHMSQAAQVDLET 147          
The following BLAST results are available for this feature:
BLAST of FC875547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ATPD_CYAP82.879e-1127.40ATP synthase subunit delta OS=Cyanothece sp. (stra... [more]
ATPD_CYAP42.879e-1127.27ATP synthase subunit delta OS=Cyanothece sp. (stra... [more]
ATPD_ANAVT2.879e-1128.06ATP synthase subunit delta OS=Anabaena variabilis ... [more]
ATPD_TRIEI3.760e-1128.67ATP synthase subunit delta OS=Trichodesmium erythr... [more]
ATPD_THEEB3.760e-1126.62ATP synthase subunit delta OS=Thermosynechococcus ... [more]
ATPD_BACP23.760e-1125.00ATP synthase subunit delta OS=Bacillus pumilus (st... [more]
ATPD_ANASP3.760e-1128.06ATP synthase subunit delta OS=Anabaena sp. (strain... [more]
ATPD_PORYE6.413e-1127.01ATP synthase subunit delta, chloroplastic OS=Porph... [more]
ATPD_ACAM16.413e-1127.97ATP synthase subunit delta OS=Acaryochloris marina... [more]

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Properties
Property NameValue
Genbank descriptionC31405B04EF CTVClemen1 Citrus clementina cDNA clone C31405B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875547 ID=FC875547; Name=FC875547; organism=Citrus clementina; type=EST; length=699bp
GAATCAATCCGTTCTTTGATTGACTCTCTCTCTCTCTGGCTCTTTCTCTG
TGTGCAGCAGAAGCAGCAGCCTCAGCCTCAGCCGCTGCCTCAGCATCAGC
ATCGGCGTTCTCATCGCGAAAAATGGTGTCTCTTCAGCAAACCGCAACCC
TCTCACTCCAATCAAACCTCTTCCCCTCCGGCCGCGCGGCCTCTCGAAAC
CCATTATCCGCCACCATCCCCTCCGGCCCACGCCGGCGCGGCGCCCACGG
AATCAGAATGTCAGCCACAGTGGCGACCAGCTACGCCATCGCGCTGGTGG
ACTTGGCGAAAGCGAACAACACCCTCGAGTCCACGAGCGCCGACGTGGAA
AAGATCGAGAAAATCTTCAGCGAGAAACAAATCCATGAGTTCTTCGTGAA
CCCCACCATCGATATCGAGAAGAAAAGAGAGATGGTGGACGAGATATGCA
AGTCGTCGGCGCTGCAGCCGCTGACCGGGAATTTCTTGAACATACTGATC
GACGCGAAGAGGGTGGACGTGGTGAAGGACATAGTGAAGGAGTTCGAGGA
GGTGTATAATAAGATGACGAATACGGAGATGGCGGTGGTGAGCTCGGTGG
TGAAGCTGGAGTCGGAGCATTTGGCTCAGATAGCGAAGCAAGTCCAGAAG
TTGACTGGGGCCAAGAATGTGAGGATAAAGACCGTGATGACCCGAGCTT
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