FC875552
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15 Identity = 61/192 (31.77%), Postives = 84/192 (43.75%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 677 R+ V ++RRREG+TDY R +L+ D R VVR TN+ II Q+V+A + GD L +A + EL +YG N AAY TGLL A + K G+D A+LD+GL + T G RVF IP+ + + + G H+AAY Sbjct: 6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15 Identity = 65/205 (31.71%), Postives = 96/205 (46.83%), Query Frame = 3 Query: 90 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL-MEDE 701 A+ +++V ++RRREGKT++R R++L+ TP R V R + +I+AQIV + VGD ++ +A++ E+ + G + N AAY TGLLL ++ LK EGN E A+LD+GL T G V IPHS++ G + I G HV Y L +EDE Sbjct: 2 AHGAKYRVPFRRRREGKTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDE 160
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15 Identity = 62/199 (31.16%), Postives = 87/199 (43.72%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698 R++VK++RRREGKTDY R+ L+ K R VVR TN+ II Q + GD V+A A++ EL +YG G N AAY TG L A R K G E A+LD+G +T G+R++ +PHS + + I G H+A++ L E+ Sbjct: 6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMRAKK--------AGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHSPEILPDEDR-------------IRGEHIASFAEKLEEE 158
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15 Identity = 60/198 (30.30%), Postives = 87/198 (43.94%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLME 695 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD +A+A++ +L YG N AAY TGLL +R + D VE A+LD+GL T G++VF +PH+D A +S+ G H+A Y +L E Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESLDE 157
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15 Identity = 60/198 (30.30%), Postives = 87/198 (43.94%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLME 695 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD +A+A++ +L YG N AAY TGLL +R + D VE A+LD+GL T G++VF +PH+D A +S+ G H+A Y +L E Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESLDE 157
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_HYPBU (50S ribosomal protein L18P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14 Identity = 70/203 (34.48%), Postives = 93/203 (45.81%), Query Frame = 3 Query: 90 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLME 695 A+ R++V +RRREGKT+Y R ++ K RFVVR TN+ I Q++ A GD +AAA++ EL +YG G N AAY TGLL A R LK G Y A+LD+GL + T G RVF IPHS+ ++ E +R I G H+A Y + L E Sbjct: 2 AHGPRYKVPRRRRREGKTNYYKRYVMVLSGKP-------RFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALK--------------AGITY------------AVLDIGLHRPTRGARVFAALKGALDAGLEIPHSE-----------EVLPEEYR--IRGEHIAKYAAMLKE 158
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14 Identity = 61/198 (30.81%), Postives = 84/198 (42.42%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLME 695 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD LA+A++ +L YG E N +AY TGLL R E VE A+LD+GL T G++VF IPH+D A + + G H+A Y L E Sbjct: 6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR-------------TRGAHIAEYDEQLEE 157
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14 Identity = 56/162 (34.57%), Postives = 75/162 (46.30%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 587 R+ V ++RR EGKTDY R+ L++ TP R VVR TN+ II Q+V + GDS L AAY+ EL YG E + AAY TG+L A V+A Y A+LD+GL + G RVF +P+ + Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14 Identity = 63/199 (31.66%), Postives = 93/199 (46.73%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698 +F+V ++RRREGKTD+R R+ L+ K R V R + ++IAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH D+ A D ++L+ G HV Y +L ED Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED 158
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14 Identity = 63/199 (31.66%), Postives = 93/199 (46.73%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698 +F+V ++RRREGKTD+R R+ L+ K R V R + ++IAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH D+ A D ++L+ G HV Y +L ED Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED 158 The following BLAST results are available for this feature:
BLAST of FC875552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875552 ID=FC875552; Name=FC875552; organism=Citrus clementina; type=EST; length=702bpback to top |