FC875552

Overview
NameFC875552
Unique NameFC875552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 61/192 (31.77%), Postives = 84/192 (43.75%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 677
            R+ V ++RRREG+TDY  R +L+  D         R VVR TN+ II Q+V+A + GD  L +A + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF            IP+ +       +             + G H+AAY
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 65/205 (31.71%), Postives = 96/205 (46.83%), Query Frame = 3
Query:   90 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL-MEDE 701
            A+  +++V ++RRREGKT++R R++L+        TP  R V R +  +I+AQIV  + VGD ++ +A++ E+ + G +    N  AAY TGLLL ++ LK        EGN E                  A+LD+GL   T G  V             IPHS++   G  +             I G HV  Y   L +EDE
Sbjct:    2 AHGAKYRVPFRRRREGKTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDE 160          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 62/199 (31.16%), Postives = 87/199 (43.72%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698
            R++VK++RRREGKTDY  R+ L+   K        R VVR TN+ II Q +     GD V+A A++ EL +YG   G  N  AAY TG L A R  K         G  E                  A+LD+G   +T G+R++            +PHS +      +             I G H+A++   L E+
Sbjct:    6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMRAKK--------AGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHSPEILPDEDR-------------IRGEHIASFAEKLEEE 158          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 60/198 (30.30%), Postives = 87/198 (43.94%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLME 695
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +S+               G H+A Y  +L E
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESLDE 157          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 60/198 (30.30%), Postives = 87/198 (43.94%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLME 695
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +S+               G H+A Y  +L E
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESLDE 157          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_HYPBU (50S ribosomal protein L18P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 70/203 (34.48%), Postives = 93/203 (45.81%), Query Frame = 3
Query:   90 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLME 695
            A+  R++V  +RRREGKT+Y  R  ++   K        RFVVR TN+ I  Q++ A   GD  +AAA++ EL  +YG   G  N  AAY TGLL A R LK               G  Y            A+LD+GL + T G RVF            IPHS+           ++  E +R  I G H+A Y + L E
Sbjct:    2 AHGPRYKVPRRRRREGKTNYYKRYVMVLSGKP-------RFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALK--------------AGITY------------AVLDIGLHRPTRGARVFAALKGALDAGLEIPHSE-----------EVLPEEYR--IRGEHIAKYAAMLKE 158          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 61/198 (30.81%), Postives = 84/198 (42.42%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLME 695
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  LA+A++ +L  YG E    N  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF            IPH+D   A + +               G H+A Y   L E
Sbjct:    6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR-------------TRGAHIAEYDEQLEE 157          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 56/162 (34.57%), Postives = 75/162 (46.30%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 587
            R+ V ++RR EGKTDY  R+ L++       TP  R VVR TN+ II Q+V   + GDS L AAY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF            +P+ +
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 63/199 (31.66%), Postives = 93/199 (46.73%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED 158          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 63/199 (31.66%), Postives = 93/199 (46.73%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED 158          
The following BLAST results are available for this feature:
BLAST of FC875552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL18_METB64.328e-1531.7750S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_META34.328e-1531.7150S ribosomal protein L18P OS=Methanococcus aeolic... [more]
RL18_KORCO4.328e-1531.1650S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]
RL18_HALSA9.642e-1530.3050S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_HALS39.642e-1530.3050S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_HYPBU1.645e-1434.4850S ribosomal protein L18P OS=Hyperthermus butylic... [more]
RL18_HALMA1.645e-1430.8150S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL18_METMJ2.148e-1434.5750S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_METM72.805e-1431.6650S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM62.805e-1431.6650S ribosomal protein L18P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionC31405B10EF CTVClemen1 Citrus clementina cDNA clone C31405B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875552 ID=FC875552; Name=FC875552; organism=Citrus clementina; type=EST; length=702bp
GACTCCTTAGCCGTCTCTCCTTCCCTCTCCTTTTCTCTTACAATTCGAAA
GTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAA
GCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACA
GAGCTAGAATTCGCCTGATTAATCAGGACAAGAATAAGTACAACACACCC
AAGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGAT
AGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCC
ATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCA
GCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGA
AATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTACT
CTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTT
GGGCTCATCAAAACAACAACTGGAAACCGTGTGTTTGGTGCTCTGAAGGG
AGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCTG
GTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTAT
ATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGAAGATGA
GC
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