FC875552

Overview
NameFC875552
Unique NameFC875552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 3
Query:  105 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            ++V++KRRREGKT+Y  R +L++ DK        R VVR T+   I Q+V     GD  L +A +  L  +G      N +AAY TG L  ++ L                 E Y             +LD+G+  +  G +++            IPH+D      S+             I G H+A Y  ++ +DE
Sbjct:    7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKAL----------------NEGYD----------ETILDIGVQPSIKGTKIYAVLKGALDAGLYIPHNDSILPEDSR-------------IRGEHIAQYAESMDDDE 159          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 60/200 (30.00%), Postives = 91/200 (45.50%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            + +V ++RRREGKTD+R R+ L+   K        R V R +  +IIAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP            G+++ A+  R  + G H+  Y   L EDE
Sbjct:    6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE 159          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 60/200 (30.00%), Postives = 91/200 (45.50%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            + +V ++RRREGKTD+R R+ L+   K        R V R +  +IIAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP            G+++ A+  R  + G H+  Y   L EDE
Sbjct:    8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE 161          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIK 512
            R++V  +RRREGKT+Y  R R+I            RF+VR T   I  Q+ +A   GD ++AAA+++EL  R+G + G  N +AAY TGLL A R L+               G +Y+V      RP +  L    IK
Sbjct:    6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAALRALE--------------KGVEYAVPDIGLHRPVKGALVFAAIK 122          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 59/205 (28.78%), Postives = 88/205 (42.93%), Query Frame = 3
Query:   90 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            A+  R++V ++RRREGKT+Y  R+ L+   K        R VVR T    +AQIV     GD  + +A+  EL R +G +    N  +AY  GLL+  + L         E  +E                  A+LD+GL   T G+ +F            +PHS++ + G              + I G H+A Y   L ED+
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAL---------EKGIE-----------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG-------------EERINGKHIAEYAKMLKEDD 160          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 58/199 (29.15%), Postives = 83/199 (41.71%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698
            R++V ++RRREG T+YR R +L+   K        R VVR TNK +IAQIV A   GD  +       L ++G +    N +AAY  GL++             Y+   +   E              A+LD+GL + T G RVF            +PH +             +     + I G HVA Y   L E+
Sbjct:    6 RYKVPFRRRREGVTNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEE 158          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 59/201 (29.35%), Postives = 92/201 (45.77%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRF-----------AGFSKDGKQLDAEVHRKYIYGGHV 668
            R++V ++RRREGKT+Y  R++L+        + K R VVR +    IAQI+  N  GD  + +A+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL   T G+ VF            +PHS++ F           A ++K  KQ D  ++RK  +GG++
Sbjct:    6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIFPEDYRIRGEHVAEYAKALKQEDETLYRKQ-FGGYL 172          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 56/199 (28.14%), Postives = 82/199 (41.21%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698
            R++V ++RRREG T+YR R +L+   K        R VVR TNK IIAQ+V A   GD  +       L ++G +    N  AAY  GL++             Y+  +    E              A+LD+GL +   G+RVF            IPH ++      +             I G H+A Y   L ++
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDR-------------ISGKHIAEYAEKLKKE 158          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 51/138 (36.96%), Postives = 69/138 (50.00%), Query Frame = 3
Query:  102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRAL---LDVGL 506
            R++V  KRRREGKT+Y  R +LI   K        R VVR  ++  I QI  A   GD V+A+A+++EL +YG +    N  A Y  G L A++ LK        +G  EA  +     P    R F A+   LD GL
Sbjct:    6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTEAIVDIGLHRPVKASRVFAAVKGALDAGL 128          
The following BLAST results are available for this feature:
BLAST of FC875552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL18_METST4.479e-1227.1450S ribosomal protein L18P OS=Methanosphaera stadt... [more]
RL18_METVS7.639e-1230.0050S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA7.639e-1230.0050S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_DESK19.977e-1236.2350S ribosomal protein L18P OS=Desulfurococcus kamc... [more]
RL18_THESM1.303e-1128.7850S ribosomal protein L18P OS=Thermococcus sibiric... [more]
RL18_PYRCJ1.303e-1129.1550S ribosomal protein L18P OS=Pyrobaculum calidifo... [more]
RL18_THEGJ2.223e-1129.3550S ribosomal protein L18P OS=Thermococcus gammato... [more]
RL18_PYRIL2.223e-1128.1450S ribosomal protein L18P OS=Pyrobaculum islandic... [more]
RL18_THEPD6.467e-1136.9650S ribosomal protein L18P OS=Thermofilum pendens ... [more]

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Properties
Property NameValue
Genbank descriptionC31405B10EF CTVClemen1 Citrus clementina cDNA clone C31405B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875552 ID=FC875552; Name=FC875552; organism=Citrus clementina; type=EST; length=702bp
GACTCCTTAGCCGTCTCTCCTTCCCTCTCCTTTTCTCTTACAATTCGAAA
GTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAA
GCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACA
GAGCTAGAATTCGCCTGATTAATCAGGACAAGAATAAGTACAACACACCC
AAGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGAT
AGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCC
ATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCA
GCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGA
AATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTACT
CTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTT
GGGCTCATCAAAACAACAACTGGAAACCGTGTGTTTGGTGCTCTGAAGGG
AGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCTG
GTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTAT
ATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGAAGATGA
GC
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