FC875552
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12 Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 3 Query: 105 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701 ++V++KRRREGKT+Y R +L++ DK R VVR T+ I Q+V GD L +A + L +G N +AAY TG L ++ L E Y +LD+G+ + G +++ IPH+D S+ I G H+A Y ++ +DE Sbjct: 7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKAL----------------NEGYD----------ETILDIGVQPSIKGTKIYAVLKGALDAGLYIPHNDSILPEDSR-------------IRGEHIAQYAESMDDDE 159
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12 Identity = 60/200 (30.00%), Postives = 91/200 (45.50%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701 + +V ++RRREGKTD+R R+ L+ K R V R + +IIAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ ++ EG E A+LD GL + T G +F IP G+++ A+ R + G H+ Y L EDE Sbjct: 6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE 159
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12 Identity = 60/200 (30.00%), Postives = 91/200 (45.50%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701 + +V ++RRREGKTD+R R+ L+ K R V R + +IIAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ ++ EG E A+LD GL + T G +F IP G+++ A+ R + G H+ Y L EDE Sbjct: 8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE 161
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12 Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIK 512 R++V +RRREGKT+Y R R+I RF+VR T I Q+ +A GD ++AAA+++EL R+G + G N +AAY TGLL A R L+ G +Y+V RP + L IK Sbjct: 6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAALRALE--------------KGVEYAVPDIGLHRPVKGALVFAAIK 122
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11 Identity = 59/205 (28.78%), Postives = 88/205 (42.93%), Query Frame = 3 Query: 90 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701 A+ R++V ++RRREGKT+Y R+ L+ K R VVR T +AQIV GD + +A+ EL R +G + N +AY GLL+ + L E +E A+LD+GL T G+ +F +PHS++ + G + I G H+A Y L ED+ Sbjct: 2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAL---------EKGIE-----------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG-------------EERINGKHIAEYAKMLKEDD 160
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11 Identity = 58/199 (29.15%), Postives = 83/199 (41.71%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698 R++V ++RRREG T+YR R +L+ K R VVR TNK +IAQIV A GD + L ++G + N +AAY GL++ Y+ + E A+LD+GL + T G RVF +PH + + + I G HVA Y L E+ Sbjct: 6 RYKVPFRRRREGVTNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEE 158
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11 Identity = 59/201 (29.35%), Postives = 92/201 (45.77%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRF-----------AGFSKDGKQLDAEVHRKYIYGGHV 668 R++V ++RRREGKT+Y R++L+ + K R VVR + IAQI+ N GD + +A+ EL R +G + N +AY GLL+ + K +E A+LD+GL T G+ VF +PHS++ F A ++K KQ D ++RK +GG++ Sbjct: 6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIFPEDYRIRGEHVAEYAKALKQEDETLYRKQ-FGGYL 172
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11 Identity = 56/199 (28.14%), Postives = 82/199 (41.21%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698 R++V ++RRREG T+YR R +L+ K R VVR TNK IIAQ+V A GD + L ++G + N AAY GL++ Y+ + E A+LD+GL + G+RVF IPH ++ + I G H+A Y L ++ Sbjct: 6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDR-------------ISGKHIAEYAEKLKKE 158
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11 Identity = 51/138 (36.96%), Postives = 69/138 (50.00%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRAL---LDVGL 506 R++V KRRREGKT+Y R +LI K R VVR ++ I QI A GD V+A+A+++EL +YG + N A Y G L A++ LK +G EA + P R F A+ LD GL Sbjct: 6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTEAIVDIGLHRPVKASRVFAAVKGALDAGL 128 The following BLAST results are available for this feature:
BLAST of FC875552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875552 ID=FC875552; Name=FC875552; organism=Citrus clementina; type=EST; length=702bpback to top |