FC875558

Overview
NameFC875558
Unique NameFC875558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15512 contig Ccv1_Contig15512:5..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_YARLI (78 kDa glucose-regulated protein homolog OS=Yarrowia lipolytica GN=KAR2 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.118e-38
Identity = 74/114 (64.91%), Postives = 93/114 (81.58%), Query Frame = 3
Query:  198 IAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            +  ++    GTVIGIDLGTTYSCVGV K G VEI+ANDQG+RITPS+VAFT+ ERL+G+AAKNQAA NP  TIFD+KRLIG K++D+ VQRD+K  PYK+ N+DGKP + V+ +
Sbjct:   28 VQADDVDSYGTVIGIDLGTTYSCVGVMKGGRVEILANDQGSRITPSYVAFTEDERLVGDAAKNQAANNPFNTIFDIKRLIGLKYKDESVQRDIKHFPYKVKNKDGKPVVVVETK 141          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.118e-38
Identity = 79/129 (61.24%), Postives = 100/129 (77.52%), Query Frame = 3
Query:  153 VVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            ++LA++  GG  A    K+E   +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KP+IQV +
Sbjct:    4 LLLALLLLGGARADDEEKKE--DVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKYLPFKVVEKKAKPHIQVDV 130          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 2.767e-38
Identity = 80/131 (61.07%), Postives = 100/131 (76.34%), Query Frame = 3
Query:  147 SLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            ++V  A++  G + A    K+E   +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I
Sbjct:    5 TVVAAALLLLGAVRAEEEDKKE--DVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDI 133          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.719e-38
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 3
Query:  213 ATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            A   GT IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMKL P++++N  GKP + V  +
Sbjct:    2 AAAKGTAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVINEGGKPKVMVSYK 110          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.719e-38
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 3
Query:  213 ATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            A   GT IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMKL P++++N  GKP + V  +
Sbjct:    2 AAAKGTAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVINEGGKPKVMVSYK 110          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_KLULA (78 kDa glucose-regulated protein homolog OS=Kluyveromyces lactis GN=GRP78 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.719e-38
Identity = 74/116 (63.79%), Postives = 92/116 (79.31%), Query Frame = 3
Query:  192 ISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            ++ A E+    GTVIGIDLGTTYSCV V KNG  EI+AN+QGNRITPS+V+FTD ERLIG+AAKNQAA NP  TIFD+KRLIG ++ D  VQRD+K  PY +VN+  KPY++V ++
Sbjct:   40 VARAAEDHEDYGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVSFTDDERLIGDAAKNQAASNPKNTIFDIKRLIGLQYNDPTVQRDIKHLPYTVVNKGNKPYVEVTVK 155          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 6.163e-38
Identity = 79/121 (65.29%), Postives = 96/121 (79.34%), Query Frame = 3
Query:  183 LFAISIAKEEATK--LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            L + + A+EE  K  +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I
Sbjct:   12 LLSAARAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDI 132          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.050e-38
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 3
Query:  183 LFAISIAKEEATK--LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            L   + A+EE  K  +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I
Sbjct:   12 LLCAARAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDI 132          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.051e-37
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            IGIDLGTTYSCVG + N  VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  TIFD KRLIGRKF+D EVQ DMK  P+K++++DGKP +QV+ +
Sbjct:    5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYK 106          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HS7C1_DICDI (Heat shock cognate 70 kDa protein 1 OS=Dictyostelium discoideum GN=hspB PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.051e-37
Identity = 75/103 (72.82%), Postives = 89/103 (86.41%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDG-KPYIQVQIR 539
            IGIDLGTTYSCVGV++N  VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF DKEVQ DMK  P+K++ +DG KP+IQV+ +
Sbjct:    4 IGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFK 106          
The following BLAST results are available for this feature:
BLAST of FC875558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_YARLI2.118e-3864.9178 kDa glucose-regulated protein homolog OS=Yarrow... [more]
GRP78_CHICK2.118e-3861.2478 kDa glucose-regulated protein OS=Gallus gallus ... [more]
GRP78_MOUSE2.767e-3861.0778 kDa glucose-regulated protein OS=Mus musculus G... [more]
HS71L_PIG4.719e-3867.89Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HS71L_BOVIN4.719e-3867.89Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
GRP78_KLULA4.719e-3863.7978 kDa glucose-regulated protein homolog OS=Kluyve... [more]
GRP78_HUMAN6.163e-3865.2978 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_SPETR8.050e-3865.2978 kDa glucose-regulated protein OS=Spermophilus t... [more]
HSP72_SCHPO1.051e-3771.57Probable heat shock protein ssa2 OS=Schizosaccharo... [more]
HS7C1_DICDI1.051e-3772.82Heat shock cognate 70 kDa protein 1 OS=Dictyosteli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405C05EF CTVClemen1 Citrus clementina cDNA clone C31405C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875558 ID=FC875558; Name=FC875558; organism=Citrus clementina; type=EST; length=541bp
GGAAACCAGAAGGCCTTTCGAAAGAAAAAAACACACTTCAAACATCGAAA
CCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTAT
AATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCCC
TCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAATT
GCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTGG
TACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATCA
TAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCACT
GACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCAA
TCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTTG
AGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGTG
AATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGA
back to top