FC875558

Overview
NameFC875558
Unique NameFC875558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.051e-37
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 3
Query:  213 ATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            AT  G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMKL P++++N  GKP + V  +
Sbjct:    2 ATAKGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYK 110          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.051e-37
Identity = 78/115 (67.83%), Postives = 93/115 (80.87%), Query Frame = 3
Query:  201 AKEEATK--LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            A+EE  K  +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I
Sbjct:   18 AEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDI 132          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.051e-37
Identity = 78/115 (67.83%), Postives = 93/115 (80.87%), Query Frame = 3
Query:  201 AKEEATK--LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            A+EE  K  +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I
Sbjct:   18 AEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDI 132          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.051e-37
Identity = 78/121 (64.46%), Postives = 95/121 (78.51%), Query Frame = 3
Query:  183 LFAISIAKEEATK--LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            L   + A+EE  K  +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV +
Sbjct:   13 LLGTARAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDV 133          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.373e-37
Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  TIFD KRLIGRKFED  VQ DMK  P+++V+  GKP +QV+ +
Sbjct:    5 GPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYK 109          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.373e-37
Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  TIFD KRLIGRKFED  VQ DMK  P+++V+  GKP +QV+ +
Sbjct:    5 GPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYK 109          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.373e-37
Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  TIFD KRLIGRKFED  VQ DMK  P+++V+  GKP +QV+ +
Sbjct:    5 GPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYK 109          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.373e-37
Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  TIFD KRLIGRKFED  VQ DMK  P+++V+  GKP +QV+ +
Sbjct:    5 GPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYK 109          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.793e-37
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  TIFD KRLIGRK++D  VQ DMK  P+++VN  GKP +QV+ +
Sbjct:    5 GPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKYDDPTVQSDMKHWPFRVVNEGGKPKVQVEYK 109          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEEL (Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.342e-37
Identity = 77/135 (57.04%), Postives = 100/135 (74.07%), Query Frame = 3
Query:  168 VFFGGLFAISIA----------KEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT--DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            +F  GL A+S            +++ TK GT+IGIDLGTTYSCVGVYKNG VEIIANDQGNRITPS+VAF+    +RLIG+AAKNQ  +NP+ TIFD KRLIGR + DK VQ D+K  P+K++++  KP ++V++
Sbjct:    4 LFLLGLIALSAVSVYCEEEEKTEKKETKYGTIIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFSGDQGDRLIGDAAKNQLTINPENTIFDAKRLIGRDYNDKTVQADIKHWPFKVIDKSNKPSVEVKV 138          
The following BLAST results are available for this feature:
BLAST of FC875558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71L_HUMAN1.051e-3767.89Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]
GRP78_RAT1.051e-3767.8378 kDa glucose-regulated protein OS=Rattus norvegi... [more]
GRP78_MESAU1.051e-3767.8378 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_BOVIN1.051e-3764.4678 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
HSP72_RAT1.373e-3770.48Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_HUMAN1.373e-3770.48Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]
HSP72_CAPHI1.373e-3770.48Heat shock-related 70 kDa protein 2 OS=Capra hircu... [more]
HSP72_BOVIN1.373e-3770.48Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]
HSP70_CHICK1.793e-3769.52Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]
HSP7C_CAEEL2.342e-3757.04Heat shock 70 kDa protein C OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionC31405C05EF CTVClemen1 Citrus clementina cDNA clone C31405C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875558 ID=FC875558; Name=FC875558; organism=Citrus clementina; type=EST; length=541bp
GGAAACCAGAAGGCCTTTCGAAAGAAAAAAACACACTTCAAACATCGAAA
CCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTAT
AATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCCC
TCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAATT
GCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTGG
TACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATCA
TAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCACT
GACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCAA
TCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTTG
AGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGTG
AATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGA
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