FC875558

Overview
NameFC875558
Unique NameFC875558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15512 contig Ccv1_Contig15512:5..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: DNAK_RALME (Chaperone protein dnaK OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dnaK PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD 509
            +G +IGIDLGTT SCV + +    ++I N +G R TPS +A+  D E L+G  AK QA  NP  T++ VKRLIGRKFE+KEVQ+D+ L PY IV  D
Sbjct:    1 MGKIIGIDLGTTNSCVSILEGNTPKVIENSEGARTTPSIIAYMEDGEILVGAPAKRQAVTNPRNTLYAVKRLIGRKFEEKEVQKDIGLMPYAIVKAD 97          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: DNAK_PROA2 (Chaperone protein dnaK OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQV 530
            +G +IGIDLGTT SCV V +     +I N +G R TPS VAFT + ERLIG AAK QA  N   T+F +KR +GRKF+  EV  + K+APYK+VN +G+  +++
Sbjct:    1 MGKIIGIDLGTTNSCVAVMQGTQPTVIENSEGYRTTPSMVAFTKNGERLIGHAAKRQAITNAKNTVFSIKRFMGRKFD--EVPNEKKIAPYKVVNINGEARVEI 102          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: DNAK_PELPB (Chaperone protein dnaK OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQV 530
            +G +IGIDLGTT SCV V +     +I N +GNR TPS +A T + +RL+G+AAK QA  NP  TIF +KR +GRK++  E+  + KLAPY+I+N  G+  +++
Sbjct:    1 MGKIIGIDLGTTNSCVSVMQGSQPTVIENSEGNRTTPSIIALTKTGDRLVGQAAKRQAITNPKNTIFSIKRFMGRKYD--EINDEKKLAPYEIINEGGEARVKI 102          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: DNAK_JANSC (Chaperone protein dnaK OS=Jannaschia sp. (strain CCS1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN 503
            +  VIGIDLGTT SCV +       +I N +G R TPS VAFTD ERL G++AK QA  NP+ TIF VKRLIGR+  D+ +++D K  P++IV+
Sbjct:    1 MAKVIGIDLGTTNSCVAIMDGSQPRVIENAEGARTTPSIVAFTDDERLAGQSAKRQAVTNPENTIFGVKRLIGRRINDEHLEKDKKNLPFEIVD 94          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: DNAK_DESDG (Chaperone protein dnaK OS=Desulfovibrio desulfuricans (strain G20) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIV-NRDGKPYIQVQIR 539
            +G +IGIDLGTT SCV + +    + I N +G R TPS V FTD ERL+G+ AK QA  NP+RT+F +KRL+GRK +  EV R  + +PY+IV   +G  Y++++ R
Sbjct:    1 MGKIIGIDLGTTNSCVYIMEGKDPKCITNPEGGRTTPSVVGFTDKERLVGDIAKRQAVTNPERTVFAIKRLMGRKADAPEVARWKEHSPYQIVAGPNGDAYVEIEGR 107          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: DNAK_CAMHC (Chaperone protein dnaK OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQV 530
            +  VIGIDLGTT SCV VY+ G  +II N +G   TPS VAFTD  E L+G++AK QA  NP++TI+ +KR++G    +K  Q   K  PYKIV+R+G   +++
Sbjct:    1 MSKVIGIDLGTTNSCVSVYERGESKIIPNKEGKNTTPSVVAFTDKGEILVGDSAKRQAVTNPEKTIYSIKRIMGLMMNEKNAQEAKKRLPYKIVDRNGACAVEI 104          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: DNAK_BRUSU (Chaperone protein dnaK OS=Brucella suis GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQV 530
            +  VIGIDLGTT SCV V    + ++I N +G R TPS +AFTD  ERL G+ AK QA  NP+ T+F VKRLIGR+++D  V +D  L PYKIV  D G  +++V
Sbjct:    1 MAKVIGIDLGTTNSCVAVMDGKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEV 105          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: DNAK_BRUO2 (Chaperone protein dnaK OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dnaK PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQV 530
            +  VIGIDLGTT SCV V    + ++I N +G R TPS +AFTD  ERL G+ AK QA  NP+ T+F VKRLIGR+++D  V +D  L PYKIV  D G  +++V
Sbjct:    1 MAKVIGIDLGTTNSCVAVMDGKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEV 105          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: DNAK_BRUAB (Chaperone protein dnaK OS=Brucella abortus GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQV 530
            +  VIGIDLGTT SCV V    + ++I N +G R TPS +AFTD  ERL G+ AK QA  NP+ T+F VKRLIGR+++D  V +D  L PYKIV  D G  +++V
Sbjct:    1 MAKVIGIDLGTTNSCVAVMDGKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEV 105          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: DNAK_BORA1 (Chaperone protein dnaK OS=Bordetella avium (strain 197N) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQ 533
            +  +IGIDLGTT SCV V   G V+II N +G R TPS VA+  D E L+G  AK QA  NP  T++ VKRLIGRKF++K VQ+D+ L PY I   D G  +++V+
Sbjct:    1 MSKIIGIDLGTTNSCVAVMDGGQVKIIENAEGARTTPSIVAYMEDGEILVGAPAKRQAVTNPKNTLYAVKRLIGRKFDEKAVQKDIHLMPYTITKADNGDAWVEVR 106          
The following BLAST results are available for this feature:
BLAST of FC875558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RALME3.630e-2253.61Chaperone protein dnaK OS=Ralstonia metallidurans ... [more]
DNAK_PROA23.630e-2250.96Chaperone protein dnaK OS=Prosthecochloris aestuar... [more]
DNAK_PELPB3.630e-2248.08Chaperone protein dnaK OS=Pelodictyon phaeoclathra... [more]
DNAK_JANSC3.630e-2253.19Chaperone protein dnaK OS=Jannaschia sp. (strain C... [more]
DNAK_DESDG3.630e-2248.60Chaperone protein dnaK OS=Desulfovibrio desulfuric... [more]
DNAK_CAMHC3.630e-2249.04Chaperone protein dnaK OS=Campylobacter hominis (s... [more]
DNAK_BRUSU3.630e-2252.38Chaperone protein dnaK OS=Brucella suis GN=dnaK PE... [more]
DNAK_BRUO23.630e-2252.38Chaperone protein dnaK OS=Brucella ovis (strain AT... [more]
DNAK_BRUAB3.630e-2252.38Chaperone protein dnaK OS=Brucella abortus GN=dnaK... [more]
DNAK_BORA13.630e-2251.89Chaperone protein dnaK OS=Bordetella avium (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31405C05EF CTVClemen1 Citrus clementina cDNA clone C31405C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875558 ID=FC875558; Name=FC875558; organism=Citrus clementina; type=EST; length=541bp
GGAAACCAGAAGGCCTTTCGAAAGAAAAAAACACACTTCAAACATCGAAA
CCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTAT
AATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCCC
TCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAATT
GCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTGG
TACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATCA
TAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCACT
GACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCAA
TCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTTG
AGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGTG
AATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGA
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