FC875558

Overview
NameFC875558
Unique NameFC875558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15512 contig Ccv1_Contig15512:5..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP7D_CAEEL (Heat shock 70 kDa protein D OS=Caenorhabditis elegans GN=hsp-4 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 73/112 (65.18%), Postives = 93/112 (83.04%), Query Frame = 3
Query:  207 EEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT--DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            E+  K+GT+IGIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAF+    ERLIG+AAKNQ  +NP+ TIFD KRLIGR + +K VQ+D+K  P+KIV++  KP ++V++
Sbjct:   24 EKEEKMGTIIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFSGDQGERLIGDAAKNQLTINPENTIFDAKRLIGRFYNEKTVQQDIKHWPFKIVDKSNKPNVEVKV 135          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP+ T+FD KRLIGRKF D+ VQ DMK  P+K+V+  GKP +QV  +
Sbjct:    6 GPSIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVFDAKRLIGRKFNDQVVQADMKHWPFKVVSDGGKPKVQVDYK 110          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP70_CLAHE (Heat shock 70 kDa protein OS=Cladosporium herbarum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            +   IGIDLGTTYSCVG+Y++  +EIIANDQGNR TPS+VAFTD+ERLIG++AKNQ A+NP  T+FD KRLIGRKF+D EVQ DMK  P+K++ + GKP  QV+ +
Sbjct:    1 MAPAIGIDLGTTYSCVGIYRDDRIEIIANDQGNRTTPSFVAFTDTERLIGDSAKNQVAINPHNTVFDAKRLIGRKFQDAEVQADMKHFPFKVIEKAGKPVTQVEFK 106          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.814e-37
Identity = 70/113 (61.95%), Postives = 90/113 (79.65%), Query Frame = 3
Query:  198 IAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            +  E     GTVIGIDLGTTYSCVGV K G VEII NDQGNRITPS+VAFT+ ERL+G+AAKNQ A NP  TIFD+KRLIG +F+DK +Q+++K  PYK+ ++DG+P ++ ++
Sbjct:   31 VKAESNENYGTVIGIDLGTTYSCVGVMKAGRVEIIPNDQGNRITPSYVAFTEDERLVGDAAKNQIASNPTNTIFDIKRLIGHRFDDKVIQKEIKHLPYKVKDQDGRPVVEAKV 143          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP70_TRIRU (Heat shock 70 kDa protein OS=Trichophyton rubrum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.900e-37
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            +   +GIDLGTTYSCVG++++  +EIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D EVQ DMK  P+K+V + GKP +QV+ +
Sbjct:    1 MAPAVGIDLGTTYSCVGIFRDDRIEIIANDQGNRTTPSFVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRKFNDAEVQADMKHFPFKVVEKSGKPIVQVEFK 106          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.162e-36
Identity = 72/99 (72.73%), Postives = 87/99 (87.88%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQV 530
            +GIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP +TIFD KRLIGRKF+D  VQ DMK  P+++V+ DGKP I+V
Sbjct:    7 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTQTIFDAKRLIGRKFDDAAVQSDMKHWPFEVVSADGKPKIEV 105          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP7C_ICTPU (Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.162e-36
Identity = 71/105 (67.62%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            G  +GIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTDSERLIG+AAKNQ A+NP  TIFD KRLIGR+FED  VQ DMK  P+K+++  G+P ++V+ +
Sbjct:    4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTIFDAKRLIGRRFEDSVVQADMKHWPFKVISDGGRPRLEVEYK 108          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.162e-36
Identity = 70/106 (66.04%), Postives = 86/106 (81.13%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            +   +GIDLGTTYSCV  + N  VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQAA+NP  T+FD KRLIGRKF+D EV  D K  P+K+++RDGKP +QV+ +
Sbjct:    1 MSRAVGIDLGTTYSCVAHFSNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQAAINPHNTVFDAKRLIGRKFDDPEVTTDAKHFPFKVISRDGKPVVQVEYK 106          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.162e-36
Identity = 72/102 (70.59%), Postives = 86/102 (84.31%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            IGIDLGTTYSCVGV++N  VEIIANDQGNR TPS+VAFTD+ERLIG++AKNQ A+NP  T+FD KRLIGRKF D EVQ D+K  P+ + ++ GKPYI+VQ R
Sbjct:    5 IGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDSAKNQVAMNPHNTVFDAKRLIGRKFADAEVQSDIKHFPFTVFDKGGKPYIRVQYR 106          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP70_NEUCR (Heat shock 70 kDa protein OS=Neurospora crassa GN=hsps-1 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.162e-36
Identity = 70/106 (66.04%), Postives = 86/106 (81.13%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            +   +GIDLGTTYSCVGV++    EIIANDQGNR TPS+VAFTD+ERL+G+AAKNQ A+NP  T+FD KRLIGRKF D EVQ DMK  P+K+++R GKP IQV+ +
Sbjct:    1 MAPAVGIDLGTTYSCVGVFREDRCEIIANDQGNRTTPSFVAFTDTERLVGDAAKNQVAMNPANTVFDAKRLIGRKFSDPEVQADMKHFPFKVIDRGGKPVIQVEFK 106          
The following BLAST results are available for this feature:
BLAST of FC875558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7D_CAEEL6.814e-3765.18Heat shock 70 kDa protein D OS=Caenorhabditis eleg... [more]
HSP70_ONCTS6.814e-3769.52Heat shock 70 kDa protein OS=Oncorhynchus tschawyt... [more]
HSP70_CLAHE6.814e-3765.09Heat shock 70 kDa protein OS=Cladosporium herbarum... [more]
GRP78_PICAN6.814e-3761.9578 kDa glucose-regulated protein homolog OS=Pichia... [more]
HSP70_TRIRU8.900e-3765.09Heat shock 70 kDa protein OS=Trichophyton rubrum G... [more]
HSP7D_DROME1.162e-3672.73Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP7C_ICTPU1.162e-3667.62Heat shock cognate 71 kDa protein OS=Ictalurus pun... [more]
HSP73_YEAST1.162e-3666.04Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
HSP71_PUCGR1.162e-3670.59Heat shock protein HSS1 OS=Puccinia graminis GN=HS... [more]
HSP70_NEUCR1.162e-3666.04Heat shock 70 kDa protein OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31405C05EF CTVClemen1 Citrus clementina cDNA clone C31405C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875558 ID=FC875558; Name=FC875558; organism=Citrus clementina; type=EST; length=541bp
GGAAACCAGAAGGCCTTTCGAAAGAAAAAAACACACTTCAAACATCGAAA
CCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTAT
AATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCCC
TCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAATT
GCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTGG
TACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATCA
TAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCACT
GACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCAA
TCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTTG
AGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGTG
AATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGA
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