FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_IDILO (Chaperone protein htpG OS=Idiomarina loihiensis GN=htpG PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.784e-33
Identity = 69/133 (51.88%), Postives = 101/133 (75.94%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            EK  FQ EV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L+D  +   GD++ L +++ +DK+ + ++I D G+GMT++D++ NLGTIAKSGT+ F  ++    + D  LIGQFGVGFYS ++ AD
Sbjct:    8 EKHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFKALSDNSLY--GDDSDLHVRVSVDKDSRTITISDNGVGMTRDDVMNNLGTIAKSGTAEFFGQLSGDEAKDSKLIGQFGVGFYSAFIVAD 138          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_ERWCT (Chaperone protein htpG OS=Erwinia carotovora subsp. atroseptica GN=htpG PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.784e-33
Identity = 74/130 (56.92%), Postives = 101/130 (77.69%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEV-LGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L+  E+  G+GD   L +++  DKEK+ L+I D GIGM+++++I NLGTIAKSGT +F+E M +    D  LIGQFGVGFYS ++ AD
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSTPELYAGDGD---LRVRVSTDKEKRTLTISDNGIGMSRDEVIDNLGTIAKSGTKSFLESMGSDQVKDSQLIGQFGVGFYSAFIVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_CAMHC (Chaperone protein htpG OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=htpG PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.784e-33
Identity = 77/137 (56.20%), Postives = 100/137 (72.99%), Query Frame = 2
Query:  305 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            K +F+ EV++L++++INSLYSNK+IFLRELISNASDALDK+ +L+LT  E        K+E  I LDKE K L+I D GIGM + +L  NLGTIA+SGT  F+E++      D NLIGQFGVGFYS ++ AD  EV+
Sbjct:    3 KRKFKTEVNQLLNLMINSLYSNKEIFLRELISNASDALDKLNYLALTKDEYKKLTYTPKIE--ITLDKEAKTLTISDTGIGMDENELENNLGTIARSGTKGFIEQLSGDAKKDSNLIGQFGVGFYSAFMVADKIEVL 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: TRAP1_MOUSE (Heat shock protein 75 kDa, mitochondrial OS=Mus musculus GN=Trap1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.860e-33
Identity = 74/157 (47.13%), Postives = 110/157 (70.06%), Query Frame = 2
Query:  257 REAESI-----SKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN--LIGQFGVGFYSVYLGADYXEV 706
            +E ES+     +  ++R +  K EFQAE  +L+DI+  SLYS K++F+RELISNASDAL+K+R   + + +VL E     +EI ++ D +K  ++I+D GIGMT+E+L+ NLGTIA+SG+ AF+E +Q   + +  +IGQFGVGFYS ++ AD  EV
Sbjct:   68 KEEESLHSIISNTEAVRGSVSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVCEGQVLPE-----MEIHLQTDAKKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLEALQNQAETSSKIIGQFGVGFYSAFMVADKVEV 219          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RICTY (Chaperone protein htpG OS=Rickettsia typhi GN=htpG PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.860e-33
Identity = 73/133 (54.89%), Postives = 103/133 (77.44%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            EK +F AEV ++++++I+SLYSNK+IF+RELISNASDA DK+R+LS ++ E++    N K  I +K+DK+ + + IRD GIGM KEDLI+NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++ AD
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELISGDSNFK--IIVKVDKDNEQIIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLSGDSKKDNMLIGQFGVGFYSSFMVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PSEPF (Chaperone protein htpG OS=Pseudomonas fluorescens (strain Pf0-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.860e-33
Identity = 74/156 (47.44%), Postives = 108/156 (69.23%), Query Frame = 2
Query:  284 SLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI*QHMMTTVCMGI 745
            S+    E   FQ EV +L+ ++I+SLYSNK+IFLRELISNASDA+DK+RF +L   E+L +G   +L+I++  DK+ K +++ D GIGM ++D+I +LGTIAKSGT+ F++ +      D +LIGQFGVGFYS ++ AD  +V  +   T    G+
Sbjct:    2 SVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALAKPELLEDG--AELKIRVSFDKDAKTVTLEDNGIGMNRDDVITHLGTIAKSGTADFMKNLSGDQKKDSHLIGQFGVGFYSAFIVADKVDVYSRRAGTAASEGV 155          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_HELPH (Chaperone protein htpG OS=Helicobacter pylori (strain HPAG1) GN=htpG PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.860e-33
Identity = 72/132 (54.55%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGA 691
            +++ FQ E+++L+D++I+SLYSNK+IFLRELISNASDALDK+ +L LTD+++  +G N    I +  D +KK L+I+D GIGM K DLI++LGTIAKSGT +F+  +      D  LIGQFGVGFYS ++ A
Sbjct:    4 QEYTFQTEINQLLDLMIHSLYSNKEIFLRELISNASDALDKLNYLMLTDEKL--KGLNITPSIHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKSFLSALSGDKKKDSALIGQFGVGFYSAFMVA 133          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_ENTS8 (Chaperone protein htpG OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=htpG PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.860e-33
Identity = 73/130 (56.15%), Postives = 101/130 (77.69%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVL-GEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L+  ++  G+GD   L +++  DK+K+ L+I D GIGMT++++I +LGTIAKSGT AF+E M    + D  LIGQFGVGFYS ++ AD
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSSPDLYEGDGD---LRVRVSFDKDKRTLTIADNGIGMTRDEVIDHLGTIAKSGTKAFLESMGSDQAKDSQLIGQFGVGFYSAFIVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: TRAP1_HUMAN (Heat shock protein 75 kDa, mitochondrial OS=Homo sapiens GN=TRAP1 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.157e-32
Identity = 71/146 (48.63%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  275 SKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN--LIGQFGVGFYSVYLGADYXEV 706
            S  S++ +  K EFQAE  +L+DI+  SLYS K++F+RELISNASDAL+K+R   ++D + L E     +EI ++ + EK  ++I+D GIGMT+E+L+ NLGTIA+SG+ AF++ +Q   + +  +IGQFGVGFYS ++ AD  EV
Sbjct:   77 STESVQGSTSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALPE-----MEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEASSKIIGQFGVGFYSAFMVADRVEV 217          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_WOLSU (Chaperone protein htpG OS=Wolinella succinogenes GN=htpG PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.157e-32
Identity = 72/132 (54.55%), Postives = 101/132 (76.52%), Query Frame = 2
Query:  305 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            K  FQ EV++L+D++I+SLYSNK+IFLRELISNASDAL+K+++L+LTD+ +       +++I    D+EKKIL++ D GIGM + DL++NLGTIAKSGT +FV ++      D  LIGQFGVGFY+ ++ AD
Sbjct:    3 KHTFQTEVNQLLDLMIHSLYSNKEIFLRELISNASDALEKLQYLTLTDENLKNLQYTPRIDIH--FDEEKKILTLSDTGIGMNESDLVENLGTIAKSGTKSFVSRLSGDKKKDSALIGQFGVGFYAAFMVAD 132          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_IDILO6.784e-3351.88Chaperone protein htpG OS=Idiomarina loihiensis GN... [more]
HTPG_ERWCT6.784e-3356.92Chaperone protein htpG OS=Erwinia carotovora subsp... [more]
HTPG_CAMHC6.784e-3356.20Chaperone protein htpG OS=Campylobacter hominis (s... [more]
TRAP1_MOUSE8.860e-3347.13Heat shock protein 75 kDa, mitochondrial OS=Mus mu... [more]
HTPG_RICTY8.860e-3354.89Chaperone protein htpG OS=Rickettsia typhi GN=htpG... [more]
HTPG_PSEPF8.860e-3347.44Chaperone protein htpG OS=Pseudomonas fluorescens ... [more]
HTPG_HELPH8.860e-3354.55Chaperone protein htpG OS=Helicobacter pylori (str... [more]
HTPG_ENTS88.860e-3356.15Chaperone protein htpG OS=Enterobacter sakazakii (... [more]
TRAP1_HUMAN1.157e-3248.63Heat shock protein 75 kDa, mitochondrial OS=Homo s... [more]
HTPG_WOLSU1.157e-3254.55Chaperone protein htpG OS=Wolinella succinogenes G... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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