FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_SODGM (Chaperone protein htpG OS=Sodalis glossinidius (strain morsitans) GN=htpG PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.157e-32
Identity = 75/129 (58.14%), Postives = 99/129 (76.74%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L+  + L EGD  +L +++  DKEK+ L+  D GIGM +E++I NLGTIAKSGT AF+E M +    D  LIGQFGVGFYS ++ AD
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSQPD-LYEGDG-ELRVRLSCDKEKRTLTFSDNGIGMRREEVIDNLGTIAKSGTKAFLESMGSDQLKDSQLIGQFGVGFYSAFIVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PSEFS (Chaperone protein htpG OS=Pseudomonas fluorescens (strain SBW25) GN=htpG PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.157e-32
Identity = 74/143 (51.75%), Postives = 104/143 (72.73%), Query Frame = 2
Query:  284 SLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            S+    E   FQ EV +L+ ++I+SLYSNK+IFLRELISNASDA+DK+RF +L+  E+L  G   +L+I++  DK+ K +++ D GIGM++ED I +LGTIAKSGT+ F++ +      D +LIGQFGVGFYS ++ AD  EV
Sbjct:    4 SVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGG--AELKIRVSFDKDAKTVTLEDNGIGMSREDAITHLGTIAKSGTADFMKNLSGDQKKDSHLIGQFGVGFYSAFIVADKVEV 144          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_MARAV (Chaperone protein htpG OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=htpG PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.157e-32
Identity = 77/139 (55.40%), Postives = 103/139 (74.10%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            N E   FQ EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L D + L EGD + L+I++  DK+   ++I D GIGMT++D+I NLGTIAKSGT+ F++++      D  LIGQFGVGFYS ++ AD  EV
Sbjct:    6 NKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAEDKLRFAALKD-DKLFEGD-SDLKIRLDYDKDAGTITIADNGIGMTRDDVIANLGTIAKSGTAEFLKQLSGDEKKDSKLIGQFGVGFYSAFIVADKVEV 142          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_FUSNN (Chaperone protein htpG OS=Fusobacterium nucleatum subsp. nucleatum GN=htpG PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.157e-32
Identity = 69/129 (53.49%), Postives = 101/129 (78.29%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLGAD 694
            F+AE   L++++I+S+Y+NK+IFLRELISNA+DA+DK++F SLTD ++L   DN K  I I +DK+ + L+I D GIGMT E++  N+GTIAKSG+  F E+++ +  GD+++IGQFGVGFYS ++ AD
Sbjct:    8 FKAETKELLNLMIHSIYTNKEIFLRELISNANDAIDKLKFQSLTDTDIL--KDNDKFRIDISVDKDNRTLTISDNGIGMTYEEVDDNIGTIAKSGSKLFKEQLEEAKKGDIDIIGQFGVGFYSGFIVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_SHIDS (Chaperone protein htpG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=htpG PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.511e-32
Identity = 72/129 (55.81%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF SL++ + L EGD  +L +++  DK+K+ L+I D G+GMT++++I +LGTIAKSGT +F+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRSLSNPD-LYEGDG-ELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_SERP5 (Chaperone protein htpG OS=Serratia proteamaculans (strain 568) GN=htpG PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.511e-32
Identity = 74/129 (57.36%), Postives = 101/129 (78.29%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L+  E L EGD  +L +++  DK+++ L+I D GIGM +E++I+NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:   11 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSAPE-LYEGDG-ELRVRLSFDKDQRTLTIADNGIGMNREEVIENLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVAD 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_ROSDO (Chaperone protein htpG OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=htpG PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.511e-32
Identity = 71/138 (51.45%), Postives = 98/138 (71.01%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE--KMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            E F FQ EV +L+DI+  SLYSN++IFLREL+SNASDA DK+R+ +LT+  +    D  +  I + +DK+ K LS+ D GIGM   DL+  LGTIA+SGT AF++  K +  GD+ LIGQFGVGFYS ++ A+  +V+
Sbjct:    8 ETFSFQTEVGQLLDIVAGSLYSNREIFLRELVSNASDACDKLRYEALTNPSLAQNAD--EFAISLAVDKKAKTLSVSDNGIGMNHGDLLDTLGTIARSGTGAFLDALKSEEKGDIGLIGQFGVGFYSAFMVAERVDVL 143          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RICFE (Chaperone protein htpG OS=Rickettsia felis GN=htpG PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.511e-32
Identity = 73/133 (54.89%), Postives = 102/133 (76.69%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            EK +F AEV ++++++I+SLYSNK+IF+RELISNASDA DK+R+LS ++ E+     N K  I +K+DK+K  + IRD GIGM K+DLI+NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++ AD
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELTSGDSNFK--ITVKVDKDKGQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLSGDSKKDNMLIGQFGVGFYSSFMVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RICCN (Chaperone protein htpG OS=Rickettsia conorii GN=htpG PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.511e-32
Identity = 72/133 (54.14%), Postives = 103/133 (77.44%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            EK +F AEV ++++++I+SLYSNK+IF+RELISNASDA DK+R+LS ++ E++    N K  I +K+DK+ + + IRD GIGM K+DLI+NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++ AD
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELVAGDSNFK--ITVKVDKDHRQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLSGDSKKDNMLIGQFGVGFYSSFMVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_MARMS (Chaperone protein htpG OS=Marinomonas sp. (strain MWYL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.511e-32
Identity = 73/133 (54.89%), Postives = 99/133 (74.44%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQ EV +L+ ++I+SLYSNK+IFLRELISNASDA+DK+RF S+ + ++L E  N  L ++I+ DK+   + I D G+GM++E+ I NLGTIAKSGTSAF+E++      D  LIGQFGVGFYS ++ AD
Sbjct:    8 ETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFESVANADLLAEDPN--LRVRIEFDKDTNTVVIDDNGVGMSREEAITNLGTIAKSGTSAFLEQLSGDQKKDSQLIGQFGVGFYSAFIVAD 138          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_SODGM1.157e-3258.14Chaperone protein htpG OS=Sodalis glossinidius (st... [more]
HTPG_PSEFS1.157e-3251.75Chaperone protein htpG OS=Pseudomonas fluorescens ... [more]
HTPG_MARAV1.157e-3255.40Chaperone protein htpG OS=Marinobacter aquaeolei (... [more]
HTPG_FUSNN1.157e-3253.49Chaperone protein htpG OS=Fusobacterium nucleatum ... [more]
HTPG_SHIDS1.511e-3255.81Chaperone protein htpG OS=Shigella dysenteriae ser... [more]
HTPG_SERP51.511e-3257.36Chaperone protein htpG OS=Serratia proteamaculans ... [more]
HTPG_ROSDO1.511e-3251.45Chaperone protein htpG OS=Roseobacter denitrifican... [more]
HTPG_RICFE1.511e-3254.89Chaperone protein htpG OS=Rickettsia felis GN=htpG... [more]
HTPG_RICCN1.511e-3254.14Chaperone protein htpG OS=Rickettsia conorii GN=ht... [more]
HTPG_MARMS1.511e-3254.89Chaperone protein htpG OS=Marinomonas sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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