FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_SHISS (Chaperone protein htpG OS=Shigella sonnei (strain Ss046) GN=htpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 71/129 (55.04%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++ + L EGD  +L +++  DK+K+ L+I D G+GMT++++I +LGTIAKSGT +F+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPD-LYEGDG-ELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_SHIFL (Chaperone protein htpG OS=Shigella flexneri GN=htpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 71/129 (55.04%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++ + L EGD  +L +++  DK+K+ L+I D G+GMT++++I +LGTIAKSGT +F+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPD-LYEGDG-ELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_SHIBS (Chaperone protein htpG OS=Shigella boydii serotype 4 (strain Sb227) GN=htpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 71/129 (55.04%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++ + L EGD  +L +++  DK+K+ L+I D G+GMT++++I +LGTIAKSGT +F+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPD-LYEGDG-ELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_SALAI (Chaperone protein htpG OS=Salinispora arenicola (strain CNS-205) GN=htpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 67/137 (48.91%), Postives = 104/137 (75.91%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDL----NLIGQFGVGFYSVYLGAD 694
            + E  EFQAE  +L+ ++++S+YSNKD+FLRELISNASDALDK+R  S+ DK++  + D + L I I++D++ + L++RD GIGMT++++++ +GTIAKSGT+  + K++ + D      LIGQFGVGFY+ ++ AD
Sbjct:    2 SGETLEFQAEARQLLQLMVHSIYSNKDVFLRELISNASDALDKLRLASMRDKDL--DVDTSDLHIAIEVDQDARTLTVRDNGIGMTRDEVVQVIGTIAKSGTAELLRKLRETTDAETSQELIGQFGVGFYAAFMVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RICRS (Chaperone protein htpG OS=Rickettsia rickettsii (strain Sheila Smith) GN=htpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 72/133 (54.14%), Postives = 102/133 (76.69%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            EK +F AEV ++++++I+SLYSNK+IF+RELISNASDA DK+R+LS ++ E++    N K  I +K+DK+   + IRD GIGM K+DLI+NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++ AD
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELVAGDSNFK--ITVKVDKDNGQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLSGDSKKDNMLIGQFGVGFYSSFMVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RICRO (Chaperone protein htpG OS=Rickettsia rickettsii (strain Iowa) GN=htpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 72/133 (54.14%), Postives = 102/133 (76.69%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            EK +F AEV ++++++I+SLYSNK+IF+RELISNASDA DK+R+LS ++ E++    N K  I +K+DK+   + IRD GIGM K+DLI+NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++ AD
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELVAGDSNFK--ITVKVDKDNGQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLSGDSKKDNMLIGQFGVGFYSSFMVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RICM5 (Chaperone protein htpG OS=Rickettsia massiliae (strain Mtu5) GN=htpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 72/133 (54.14%), Postives = 102/133 (76.69%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            EK +F AEV ++++++I+SLYSNK+IF+RELISNASDA DK+R+LS ++ E++    N K  I +K+DK+   + IRD GIGM K+DLI+NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++ AD
Sbjct:    6 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELVAGDSNFK--ITVKVDKDNGQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLSGDSKKDNMLIGQFGVGFYSSFMVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RICAH (Chaperone protein htpG OS=Rickettsia akari (strain Hartford) GN=htpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 73/133 (54.89%), Postives = 100/133 (75.19%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            EK +F AEV ++++++I+SLYSNK+IF+RELISNASDA DK+R+LS +  E++    N K  I +K+DK+   + IRD GIGM KEDLI NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++ AD
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSHSELVASDSNFK--ITVKVDKDNWQIIIRDNGIGMNKEDLIDNLGTIARSGTANFLKSLSGDSKKDNMLIGQFGVGFYSSFMVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_METFK (Chaperone protein htpG OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=htpG1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 70/133 (52.63%), Postives = 100/133 (75.19%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQAEV +L+ ++I+SLYSNK+I LRELISNASDA DK+RF +L D  +   G+++ L+I++  DK+ + ++I D GIGM++E++I N+GTIAKSGT  F++ +    + D NLIGQFGVGFYS ++ AD
Sbjct:    9 ETLGFQAEVKQLLQLMIHSLYSNKEIVLRELISNASDAADKLRFEALADNSLY--GNDSDLKIRVSFDKQARTITISDNGIGMSREEVINNIGTIAKSGTKEFLQSLTGDQAKDANLIGQFGVGFYSAFIIAD 139          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_EHRRW (Chaperone protein htpG OS=Ehrlichia ruminantium (strain Welgevonden) GN=htpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 71/137 (51.82%), Postives = 103/137 (75.18%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT-----SGDLNLIGQFGVGFYSVYLGA 691
            N+E+ +F AEV +++ ++I+SLY+NKDIFLRELISNASDA DK+R+ SL++++++  G  ++L+I I +DK+K  L I D GIGM +EDLI NLGTIA SGT  F++ + +      G + LIG+FGVGFYS ++ A
Sbjct:    6 NSERLKFDAEVGKVLKLVIHSLYTNKDIFLRELISNASDACDKLRYQSLSNQDLMDAG--SELKIVISVDKDKNRLYISDNGIGMNREDLINNLGTIAHSGTQKFLDAINSGASSQQGVVELIGKFGVGFYSAFMVA 140          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_SHISS3.367e-3255.04Chaperone protein htpG OS=Shigella sonnei (strain ... [more]
HTPG_SHIFL3.367e-3255.04Chaperone protein htpG OS=Shigella flexneri GN=htp... [more]
HTPG_SHIBS3.367e-3255.04Chaperone protein htpG OS=Shigella boydii serotype... [more]
HTPG_SALAI3.367e-3248.91Chaperone protein htpG OS=Salinispora arenicola (s... [more]
HTPG_RICRS3.367e-3254.14Chaperone protein htpG OS=Rickettsia rickettsii (s... [more]
HTPG_RICRO3.367e-3254.14Chaperone protein htpG OS=Rickettsia rickettsii (s... [more]
HTPG_RICM53.367e-3254.14Chaperone protein htpG OS=Rickettsia massiliae (st... [more]
HTPG_RICAH3.367e-3254.89Chaperone protein htpG OS=Rickettsia akari (strain... [more]
HTPG_METFK3.367e-3252.63Chaperone protein htpG OS=Methylobacillus flagella... [more]
HTPG_EHRRW3.367e-3251.82Chaperone protein htpG OS=Ehrlichia ruminantium (s... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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