FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15423 contig Ccv1_Contig15423:43..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.844e-39
Identity = 83/136 (61.03%), Postives = 106/136 (77.94%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGAD 694
            +  NAE F FQAE+++LM +IIN+ YSNK+I+LRELISNASDALDKIR+ +LT+   L  G   +L I+I  +KE+K L+I D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS +L AD
Sbjct:    1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGK--ELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAFLVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.844e-39
Identity = 83/136 (61.03%), Postives = 106/136 (77.94%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGAD 694
            +  NAE F FQAE+++LM +IIN+ YSNK+I+LRELISNASDALDKIR+ +LT+   L  G   +L I+I  +KE+K L+I D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS +L AD
Sbjct:    1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGK--ELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAFLVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP83_TRYBB (Heat shock protein 83 OS=Trypanosoma brucei brucei GN=HSP83 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.851e-39
Identity = 80/136 (58.82%), Postives = 105/136 (77.21%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDA DKIR+ SLT++ VLG  D   L I++  D+  K L++ D GIGMTK DL+ NLGTIA+SGT +F+E ++  GD+++IGQFGVGFYS YL AD   V+
Sbjct:    3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNSSDACDKIRYQSLTNQSVLG--DEPHLRIRVIPDRVNKTLTVEDSGIGMTKADLVNNLGTIARSGTKSFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVV 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP82_YEAST (ATP-dependent molecular chaperone HSP82 OS=Saccharomyces cerevisiae GN=HSP82 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.335e-39
Identity = 86/138 (62.32%), Postives = 110/138 (79.71%), Query Frame = 2
Query:  299 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTD-KEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +E FEFQAE+++LM +IIN++YSNK+IFLRELISNASDALDKIR+ SL+D K++  E D   L I+I    E+K+L IRD GIGMTK +LI NLGTIAKSGT AF+E +    D+++IGQFGVGFYS++L AD  +VI
Sbjct:    3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPD---LFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVI 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSC90_DICDI (Heat shock cognate 90 kDa protein OS=Dictyostelium discoideum GN=hspD PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.335e-39
Identity = 83/135 (61.48%), Postives = 108/135 (80.00%), Query Frame = 2
Query:  293 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLGAD 694
            +  E+F FQAE+++LM +IIN+ YSNK++FLRELISNASDALDKIR+ SLTD  VL     T+LEI+I  DK  K L++ D GIGMTK D++KNLGTIA+SGT  F+E++Q+ + D+++IGQFGVGFYS YL AD
Sbjct:    4 SQVERFTFQAEINQLMSLIINTFYSNKEVFLRELISNASDALDKIRYQSLTDASVL--ESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLGTIARSGTKNFMEQLQSGAADISMIGQFGVGFYSAYLVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP82_AJECA (Heat shock protein 82 OS=Ajellomyces capsulata GN=HSP82 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.274e-39
Identity = 85/138 (61.59%), Postives = 105/138 (76.09%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            ++E FEFQAE+S+L+ +IIN++YSNK+IFLRELISN SDALDKIR+ +L+D   L E D   L I I  DKE K L+IRD GIGMTK DL+ NLGTIA+SGT  F+E +    D+++IGQFGVGFYS YL AD   VI
Sbjct:    2 SSETFEFQAEISQLLSLIINTVYSNKEIFLRELISNFSDALDKIRYKALSDPSKL-ESDKD-LRIDITPDKENKTLTIRDTGIGMTKADLVNNLGTIARSGTKQFMEALTAGADISMIGQFGVGFYSAYLVADKVTVI 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 8.274e-39
Identity = 83/140 (59.29%), Postives = 107/140 (76.43%), Query Frame = 2
Query:  299 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            AE F FQAE+++LM +IIN+ YSNK+IFLREL+SNASDALDKIR+ SLTD   L  G + K++I   +  +++ L++ D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL A+   VI +H
Sbjct:   11 AETFAFQAEIAQLMSLIINTFYSNKEIFLRELVSNASDALDKIRYESLTDPTKLDSGKDLKIDIIPNV--QERTLTLIDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKH 148          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: H90A1_DANRE (Heat shock protein HSP 90-alpha 1 OS=Danio rerio GN=hsp90a.1 PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.081e-38
Identity = 86/152 (56.58%), Postives = 113/152 (74.34%), Query Frame = 2
Query:  266 ESISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTK-LEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E  ++  +    E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ SLTD   L   D+ K L+I++  D++++ L+I D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL A+   VI +H
Sbjct:    3 EKSAQPVMEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKL---DSCKDLKIELIPDQKERTLTIIDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKH 151          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP90_CANAL (Heat shock protein 90 homolog OS=Candida albicans GN=HSP90 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.411e-38
Identity = 82/139 (58.99%), Postives = 108/139 (77.70%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E  EF AE+S+LM +IIN++YSNK+IFLRELISNASDALDKIR+ +L+D   L      +L I+I   K++K+L IRD GIGMTK DL+ NLGTIAKSGT +F+E +    D+++IGQFGVGFYS++L AD+ +VI +H
Sbjct:    7 ETHEFTAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQALSDPSQLES--EPELFIRIIPQKDQKVLEIRDSGIGMTKADLVNNLGTIAKSGTKSFMEALSAGADVSMIGQFGVGFYSLFLVADHVQVISKH 143          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.411e-38
Identity = 84/139 (60.43%), Postives = 106/139 (76.26%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E F FQAE+++LM +IIN+ YSNK+IFLRELISNASDALDKIR+ SLTD   L  G   +L+I I  + +++ L++ D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL A+   VI +H
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGK--ELKIDILPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKH 149          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HSP90_CAEEL2.844e-3961.03Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]
HSP90_CAEBR2.844e-3961.03Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]
HSP83_TRYBB4.851e-3958.82Heat shock protein 83 OS=Trypanosoma brucei brucei... [more]
HSP82_YEAST6.335e-3962.32ATP-dependent molecular chaperone HSP82 OS=Sacchar... [more]
HSC90_DICDI6.335e-3961.48Heat shock cognate 90 kDa protein OS=Dictyostelium... [more]
HSP82_AJECA8.274e-3961.59Heat shock protein 82 OS=Ajellomyces capsulata GN=... [more]
HS90B_DANRE8.274e-3959.29Heat shock protein HSP 90-beta OS=Danio rerio GN=h... [more]
H90A1_DANRE1.081e-3856.58Heat shock protein HSP 90-alpha 1 OS=Danio rerio G... [more]
HSP90_CANAL1.411e-3858.99Heat shock protein 90 homolog OS=Candida albicans ... [more]
HS90B_MOUSE1.411e-3860.43Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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