FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_ANAPZ (Chaperone protein htpG OS=Anaplasma phagocytophilum (strain HZ) GN=htpG PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.116e-30
Identity = 67/132 (50.76%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGA 691
            E+ +F AEV +++ ++++SLY+NKDIFLREL+SNASDA DK+R   L++ +++ EG+  +L++ I +DK+ K LSI D GIGM +++LI NLGTIA SGT  F+E +    +   +LIG+FGVGFYSV++ A
Sbjct:    5 EELKFDAEVGKVLSLVVHSLYTNKDIFLRELLSNASDACDKLRHEFLSNHDLMEEGE--ELKVVISVDKDSKQLSICDNGIGMNRDELIANLGTIASSGTQRFLEALGGDKAKGYDLIGKFGVGFYSVFMVA 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_NITWN (Chaperone protein htpG OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpG PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.375e-30
Identity = 66/140 (47.14%), Postives = 106/140 (75.71%), Query Frame = 2
Query:  299 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT--SGD-LNLIGQFGVGFYSVYLGADYXEVI 709
            AE   F+A+V++L+ ++++S+YS+KD+FLRELISNA+DA +++R+ +++D  +L   D T+  I I +D E++ L++ D GIGM +++L+  LGTIA+SGT AF+E+ +   SGD + LIGQFGVGFYS ++ AD  +V+
Sbjct:   11 AESRVFEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYEAISDPALL--TDETRPRISITIDAERRQLAVEDNGIGMGRDELVDALGTIARSGTKAFIEQAEAAESGDGVALIGQFGVGFYSAFMVADQVDVV 148          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_CHRVO (Chaperone protein htpG OS=Chromobacterium violaceum GN=htpG PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.375e-30
Identity = 67/133 (50.38%), Postives = 98/133 (73.68%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQ EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF  L   E+    ++ +L+I+I  DK+ + ++I D GIGM++++++ ++GTIAKSGT +F E++      D +LIGQFGVGFYS ++ AD
Sbjct:    6 ETLGFQTEVKQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEGLAKPELF--ENDPELKIRIAFDKDARTITIADNGIGMSRDEVVSHIGTIAKSGTKSFFEQLSGDEKKDAHLIGQFGVGFYSAFIVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BACHD (Chaperone protein htpG OS=Bacillus halodurans GN=htpG PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.375e-30
Identity = 67/131 (51.15%), Postives = 97/131 (74.05%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGAD 694
            E+ EF+AE  RL+++++NS+YS K+IFLRELISNASDA+DKI + +L+D  +    D+    I++  +KE + L++ D GIGMTKE+L  NLGTIAKSG+ AF  + ++    ++IGQFGVGFYS ++ AD
Sbjct:    2 ERKEFKAESKRLLEMMVNSIYSQKEIFLRELISNASDAIDKIYYRALSDDSITFNKDD--YFIKVTANKEDRTLTVSDTGIGMTKEELESNLGTIAKSGSLAFKTENESKDGHDIIGQFGVGFYSAFMVAD 130          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_POLSJ (Chaperone protein htpG OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=htpG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.020e-30
Identity = 70/133 (52.63%), Postives = 98/133 (73.68%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV++L++++ +SLYSN DIFLRELISNASDA DK+RF +L D   L EGD ++L+++++ +K    L+I D GIG+++ + I+NLGTIAKSGT  F+ K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTLSFQAEVAQLLNLVTHSLYSNPDIFLRELISNASDACDKLRFEALND-AALYEGD-SELQVRLRYNKTANTLTITDNGIGLSEREAIENLGTIAKSGTRDFMAKLSGDQKNDAQLIGQFGVGFYSGFIVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_MYCTU (Chaperone protein htpG OS=Mycobacterium tuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.020e-30
Identity = 67/142 (47.18%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGT----SAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            + E+ EFQAE  +L+D++++S+YSNKD FLRELISNASDALDK+R  +L +K++  E D + L I+I  DK  + L++RD GIGM +E+++  +GT+AKSGT    +   E    +    LIGQFG+GFYS ++ AD  +++
Sbjct:    4 HVEQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRIEALRNKDL--EVDTSDLHIEIDADKAARTLTVRDNGIGMAREEVVDLIGTLAKSGTAELRAQLREAKNAAASEELIGQFGIGFYSSFMVADKVQLL 143          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_MYCTA (Chaperone protein htpG OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=htpG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.020e-30
Identity = 67/142 (47.18%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGT----SAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            + E+ EFQAE  +L+D++++S+YSNKD FLRELISNASDALDK+R  +L +K++  E D + L I+I  DK  + L++RD GIGM +E+++  +GT+AKSGT    +   E    +    LIGQFG+GFYS ++ AD  +++
Sbjct:    4 HVEQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRIEALRNKDL--EVDTSDLHIEIDADKAARTLTVRDNGIGMAREEVVDLIGTLAKSGTAELRAQLREAKNAAASEELIGQFGIGFYSSFMVADKVQLL 143          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_MYCBP (Chaperone protein htpG OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=htpG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.020e-30
Identity = 67/142 (47.18%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGT----SAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            + E+ EFQAE  +L+D++++S+YSNKD FLRELISNASDALDK+R  +L +K++  E D + L I+I  DK  + L++RD GIGM +E+++  +GT+AKSGT    +   E    +    LIGQFG+GFYS ++ AD  +++
Sbjct:    4 HVEQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRIEALRNKDL--EVDTSDLHIEIDADKAARTLTVRDNGIGMAREEVVDLIGTLAKSGTAELRAQLREAKNAAASEELIGQFGIGFYSSFMVADKVQLL 143          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_MYCBO (Chaperone protein htpG OS=Mycobacterium bovis GN=htpG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.020e-30
Identity = 67/142 (47.18%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGT----SAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            + E+ EFQAE  +L+D++++S+YSNKD FLRELISNASDALDK+R  +L +K++  E D + L I+I  DK  + L++RD GIGM +E+++  +GT+AKSGT    +   E    +    LIGQFG+GFYS ++ AD  +++
Sbjct:    4 HVEQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRIEALRNKDL--EVDTSDLHIEIDADKAARTLTVRDNGIGMAREEVVDLIGTLAKSGTAELRAQLREAKNAAASEELIGQFGIGFYSSFMVADKVQLL 143          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_EXIS2 (Chaperone protein htpG OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=htpG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.020e-30
Identity = 69/136 (50.74%), Postives = 102/136 (75.00%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            E  +F+AE  RL++++I+S+Y++K+IFLRELISNASDA+DKI + +LTD+ +  + D  K  I I+ +KE + L +RD GIGMTK++L +NLGTIAKSG+ AF  + ++    ++IGQFGVGFYS ++ AD   V+
Sbjct:    2 ETKQFKAESKRLLEMMIHSIYTHKEIFLRELISNASDAMDKIYYKALTDETITFDKDAYK--ITIEPNKETRQLILRDTGIGMTKDELEENLGTIAKSGSLAFKAENESKDGHDIIGQFGVGFYSAFMVADTVTVV 135          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_ANAPZ4.116e-3050.76Chaperone protein htpG OS=Anaplasma phagocytophilu... [more]
HTPG_NITWN5.375e-3047.14Chaperone protein htpG OS=Nitrobacter winogradskyi... [more]
HTPG_CHRVO5.375e-3050.38Chaperone protein htpG OS=Chromobacterium violaceu... [more]
HTPG_BACHD5.375e-3051.15Chaperone protein htpG OS=Bacillus halodurans GN=h... [more]
HTPG_POLSJ7.020e-3052.63Chaperone protein htpG OS=Polaromonas sp. (strain ... [more]
HTPG_MYCTU7.020e-3047.18Chaperone protein htpG OS=Mycobacterium tuberculos... [more]
HTPG_MYCTA7.020e-3047.18Chaperone protein htpG OS=Mycobacterium tuberculos... [more]
HTPG_MYCBP7.020e-3047.18Chaperone protein htpG OS=Mycobacterium bovis (str... [more]
HTPG_MYCBO7.020e-3047.18Chaperone protein htpG OS=Mycobacterium bovis GN=h... [more]
HTPG_EXIS27.020e-3050.74Chaperone protein htpG OS=Exiguobacterium sibiricu... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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