FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURS3 (Chaperone protein htpG OS=Burkholderia sp. (strain 383) GN=htpG PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 69/133 (51.88%), Postives = 92/133 (69.17%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF  L D  +  +  N +  I+I  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYEDDPNVR--IRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLSGDQQKDAALIGQFGVGFYSGFIVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURCH (Chaperone protein htpG OS=Burkholderia cenocepacia (strain HI2424) GN=htpG PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 70/133 (52.63%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF  L D  +     N  L I+I  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPN--LRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLSGDQQKDAALIGQFGVGFYSGFIVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURCA (Chaperone protein htpG OS=Burkholderia cenocepacia (strain AU 1054) GN=htpG PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 70/133 (52.63%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF  L D  +     N  L I+I  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPN--LRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLSGDQQKDAALIGQFGVGFYSGFIVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BORPE (Chaperone protein htpG OS=Bordetella pertussis GN=htpG PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 70/148 (47.30%), Postives = 104/148 (70.27%), Query Frame = 2
Query:  272 ISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +S+ +  + +E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF ++ D+  L EGD  +L I++  DK  + ++I D GIG+++++ + NLGTIA+SGT  F  ++      D  LIGQFGVGFYS ++ AD   V+
Sbjct:    1 MSQTTTTSASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAI-DQPGLLEGDG-ELAIRVGYDKAARTITISDNGIGLSRDEAVANLGTIARSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADKVTVL 146          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RALEJ (Chaperone protein htpG OS=Ralstonia eutropha (strain JMP134) GN=htpG PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.551e-29
Identity = 67/133 (50.38%), Postives = 95/133 (71.43%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF ++ +  +L   ++  L I+I+ D   + L I D GIGM++++ I+NLGTIA+SGT  F +++      D  LIGQFGVGFYS ++ AD
Sbjct:    6 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLL--ENDADLAIRIEADTAARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLSGDQQKDAALIGQFGVGFYSAFIVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RALEH (Chaperone protein htpG OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=htpG PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.551e-29
Identity = 67/133 (50.38%), Postives = 96/133 (72.18%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF ++ +  +L   ++  L I+I+ D + + L+I D GIGM++++ I NLGTIA+SGT  F +++      D  LIGQFGVGFYS ++ AD
Sbjct:    6 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLL--ENDADLAIRIEADAKARTLTITDNGIGMSRDEAIHNLGTIARSGTKEFFQQLSGDQQKDAALIGQFGVGFYSAFIVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_METRJ (Chaperone protein htpG OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=htpG PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.551e-29
Identity = 68/134 (50.75%), Postives = 96/134 (71.64%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF---VEKMQTSGDLNLIGQFGVGFYSVYLGAD 694
            E+ EF AEV RL+D+++++LYS+++IFLREL++NA+DA+D+ RF +LT        D    +++I  DKE + L++ D GIGMTKEDL  NLGTIA+SGT AF   +E  +     +LIGQFGVGFYS ++ AD
Sbjct:    6 ERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADAMDRRRFEALTSAASALPPD---AKVRIAPDKEARTLTVSDAGIGMTKEDLATNLGTIARSGTRAFSQTLESAKAEDRPSLIGQFGVGFYSAFMVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_HELHP (Chaperone protein htpG OS=Helicobacter hepaticus GN=htpG PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.551e-29
Identity = 70/135 (51.85%), Postives = 99/135 (73.33%), Query Frame = 2
Query:  299 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN----LIGQFGVGFYSVYLGA 691
            A K +FQ E+++L+D++I+SLYS+K+IFLRELISNASDALDK+ +L+LT + +  +  + +  I I  D+EKK ++I D GIGM + D+ ++LG IAKSGT +F+   Q SGD      LIGQFGVGFYS ++ A
Sbjct:    2 ATKHQFQTEITQLLDLMIHSLYSHKEIFLRELISNASDALDKLSYLTLTQENL--KTLSFEPRIDISFDEEKKTITIEDNGIGMNENDMKEHLGIIAKSGTKSFLS--QLSGDKKKDSALIGQFGVGFYSAFMVA 132          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BORPA (Chaperone protein htpG OS=Bordetella parapertussis GN=htpG PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.551e-29
Identity = 69/148 (46.62%), Postives = 104/148 (70.27%), Query Frame = 2
Query:  272 ISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +S+ +  + +E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF ++ D+  L +GD  +L I++  DK  + ++I D GIG+++++ + NLGTIA+SGT  F  ++      D  LIGQFGVGFYS ++ AD   V+
Sbjct:    1 MSQTTTNSASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAI-DQPGLLDGDG-ELAIRVDYDKAARTITISDNGIGLSRDEAVANLGTIARSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADKVTVL 146          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BORBR (Chaperone protein htpG OS=Bordetella bronchiseptica GN=htpG PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.551e-29
Identity = 69/148 (46.62%), Postives = 104/148 (70.27%), Query Frame = 2
Query:  272 ISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +S+ +  + +E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF ++ D+  L +GD  +L I++  DK  + ++I D GIG+++++ + NLGTIA+SGT  F  ++      D  LIGQFGVGFYS ++ AD   V+
Sbjct:    1 MSQTTTNSASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAI-DQPGLLDGDG-ELAIRVDYDKAARTITISDNGIGLSRDEAVANLGTIARSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADKVTVL 146          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_BURS33.484e-2951.88Chaperone protein htpG OS=Burkholderia sp. (strain... [more]
HTPG_BURCH3.484e-2952.63Chaperone protein htpG OS=Burkholderia cenocepacia... [more]
HTPG_BURCA3.484e-2952.63Chaperone protein htpG OS=Burkholderia cenocepacia... [more]
HTPG_BORPE3.484e-2947.30Chaperone protein htpG OS=Bordetella pertussis GN=... [more]
HTPG_RALEJ4.551e-2950.38Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_RALEH4.551e-2950.38Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_METRJ4.551e-2950.75Chaperone protein htpG OS=Methylobacterium radioto... [more]
HTPG_HELHP4.551e-2951.85Chaperone protein htpG OS=Helicobacter hepaticus G... [more]
HTPG_BORPA4.551e-2946.62Chaperone protein htpG OS=Bordetella parapertussis... [more]
HTPG_BORBR4.551e-2946.62Chaperone protein htpG OS=Bordetella bronchiseptic... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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