FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURPS (Chaperone protein htpG OS=Burkholderia pseudomallei GN=htpG PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 2 
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L +   L E D   L I++  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEAL-ENNALYESD-PNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLSGDQQKDAALIGQFGVGFYSGFIVAD 134
[Close]
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURP6 (Chaperone protein htpG OS=Burkholderia pseudomallei (strain 668) GN=htpG PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 2 
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L +   L E D   L I++  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEAL-ENNALYESD-PNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLSGDQQKDAALIGQFGVGFYSGFIVAD 134
[Close]
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURP1 (Chaperone protein htpG OS=Burkholderia pseudomallei (strain 1710b) GN=htpG PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 2 
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L +   L E D   L I++  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEAL-ENNALYESD-PNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLSGDQQKDAALIGQFGVGFYSGFIVAD 134
[Close]
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURP0 (Chaperone protein htpG OS=Burkholderia pseudomallei (strain 1106a) GN=htpG PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 2 
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L +   L E D   L I++  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEAL-ENNALYESD-PNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLSGDQQKDAALIGQFGVGFYSGFIVAD 134
[Close]
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURMS (Chaperone protein htpG OS=Burkholderia mallei (strain SAVP1) GN=htpG PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 2 
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L +   L E D   L I++  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEAL-ENNALYESD-PNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLSGDQQKDAALIGQFGVGFYSGFIVAD 134
[Close]
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURMA (Chaperone protein htpG OS=Burkholderia mallei GN=htpG PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 2 
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L +   L E D   L I++  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEAL-ENNALYESD-PNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLSGDQQKDAALIGQFGVGFYSGFIVAD 134
[Close]
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURM9 (Chaperone protein htpG OS=Burkholderia mallei (strain NCTC 10229) GN=htpG PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 2 
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L +   L E D   L I++  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEAL-ENNALYESD-PNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLSGDQQKDAALIGQFGVGFYSGFIVAD 134
[Close]
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURM7 (Chaperone protein htpG OS=Burkholderia mallei (strain NCTC 10247) GN=htpG PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 2 
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L +   L E D   L I++  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEAL-ENNALYESD-PNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLSGDQQKDAALIGQFGVGFYSGFIVAD 134
[Close]
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BDEBA (Chaperone protein htpG OS=Bdellovibrio bacteriovorus GN=htpG PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 68/130 (52.31%), Postives = 99/130 (76.15%), Query Frame = 2 
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE---KMQTSGDLNLIGQFGVGFYSVYLGAD 694
            F AE+ +L+DI+I+SLYS+K+IFLREL+SNASDA+DK++F SLT   +L E  N +  I+++ + E K L I D GIGMT+E++++ +GTIA+SG  AF++   +M+T  +  LIGQFGVGFYS ++ AD
Sbjct:    8 FNAEIKQLLDIVIHSLYSHKEIFLRELLSNASDAIDKLKFNSLTHPSLLPE--NWQPAIRLEPNSETKTLKIIDNGIGMTQEEVVEFIGTIARSGAKAFMQMNAEMKTKPE--LIGQFGVGFYSAFMVAD 133
[Close]
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BUCCC (Chaperone protein htpG OS=Buchnera aphidicola subsp. Cinara cedri GN=htpG PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.729e-28
Identity = 76/148 (51.35%), Postives = 102/148 (68.92%), Query Frame = 2 
Query:  293 NNAEKFE--FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNT-KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT---SGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            NN  K    FQ+EV  L+ ++I+SLYSNK+IFLRELISNASDA++KIRF  L   +   E   T K++I IK D++K I+S  D GIGMT +++IKNLGTIAKSGT +F+ K+Q        + IGQFGVGFYS ++ ++   V  +H
Sbjct:    2 NNKNKITHTFQSEVKELLHLMIHSLYSNKEIFLRELISNASDAIEKIRFEKLYSLKKYRENLYTPKIKISIKKDEKKIIIS--DNGIGMTYKEVIKNLGTIAKSGTKSFLNKIQNIEKKEKNDFIGQFGVGFYSSFIVSNSVSVYTRH 147
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_BURPS1.324e-2851.88Chaperone protein htpG OS=Burkholderia pseudomalle... [more]
HTPG_BURP61.324e-2851.88Chaperone protein htpG OS=Burkholderia pseudomalle... [more]
HTPG_BURP11.324e-2851.88Chaperone protein htpG OS=Burkholderia pseudomalle... [more]
HTPG_BURP01.324e-2851.88Chaperone protein htpG OS=Burkholderia pseudomalle... [more]
HTPG_BURMS1.324e-2851.88Chaperone protein htpG OS=Burkholderia mallei (str... [more]
HTPG_BURMA1.324e-2851.88Chaperone protein htpG OS=Burkholderia mallei GN=h... [more]
HTPG_BURM91.324e-2851.88Chaperone protein htpG OS=Burkholderia mallei (str... [more]
HTPG_BURM71.324e-2851.88Chaperone protein htpG OS=Burkholderia mallei (str... [more]
HTPG_BDEBA1.324e-2852.31Chaperone protein htpG OS=Bdellovibrio bacteriovor... [more]
HTPG_BUCCC1.729e-2851.35Chaperone protein htpG OS=Buchnera aphidicola subs... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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